MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:33.6 nTPM
HPA:33.6 nTPM
GTEx:21.5 nTPM
FANTOM5:80.2 Scaled Tags Per Million
Pig:24.9 nTPM
Mouse:28.3 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 33.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 23.8
2411 Female, age 72, unknown 27.7
1833 Male, age 53, unknown 26.8
1870 Female, age 42, unknown 26.3
2219 Male, age 76, both hemispheres 24.9
2019 Male, age 18, unknown 24.3
1830 Male, age 51, unknown 23.7
1827 Male, age 72, unknown 22.9
2828 Female, age 72, unknown 22.1
2586 Male, age 75, left hemisphere 20.0
2666 Male, age 74, left hemisphere 19.4
Dorsal raphe nucleus
nTPM: 26.3
2298 Female, age 72, unknown 31.0
2750 Male, age 76, both hemispheres 29.8
2047 Male, age 72, unknown 26.4
1828 Male, age 53, unknown 22.3
2016 Female, age 72, unknown 22.1
Inferior colliculus
nTPM: 23.0
2097 Female, age 72, unknown 27.0
1848 Female, age 42, unknown 22.9
2849 Male, age 72, unknown 22.0
1890 Male, age 53, unknown 20.2
Median raphe nucleus
nTPM: 33.6
2220 Male, age 76, midline 33.6
Pedunculopontine tegmental nucleus
nTPM: 26.3
2334 Male, age 80, both hemispheres 30.5
1921 Female, age 85, both hemispheres 27.7
2338 Male, age 61, both hemispheres 20.7
Periaquaductal grey, anterior
nTPM: 23.5
1947 Male, age 18, unknown 25.0
2502 Female, age 75, unknown 25.0
1795 Male, age 51, unknown 20.4
Periaquaductal grey, dorsal
nTPM: 23.0
2850 Male, age 76, both hemispheres 23.9
1831 Male, age 72, unknown 23.2
1840 Male, age 53, unknown 23.2
2464 Female, age 72, unknown 21.8
Periaquaductal grey, lateral
nTPM: 21.9
2140 Male, age 76, both hemispheres 22.4
2272 Male, age 74, both hemispheres 22.3
2053 Male, age 18, unknown 20.9
Pretectal area
nTPM: 24.7
1816 Male, age 51, unknown 29.9
1944 Female, age 72, unknown 28.8
1817 Female, age 42, unknown 28.5
2224 Female, age 72, unknown 26.2
1815 Male, age 53, unknown 25.2
2007 Male, age 72, unknown 25.1
2316 Male, age 76, right hemisphere 23.5
2273 Male, age 74, both hemispheres 23.1
2825 Male, age 18, unknown 22.0
2667 Female, age 75, unknown 21.9
2407 Male, age 75, both hemispheres 18.0
Red nucleus
nTPM: 24.6
1821 Female, age 72, unknown 29.2
1904 Male, age 53, unknown 28.3
1954 Female, age 42, unknown 26.8
2503 Female, age 72, unknown 26.1
1865 Male, age 51, unknown 25.4
2227 Male, age 72, unknown 24.6
2785 Male, age 18, unknown 24.5
2769 Male, age 72, unknown 23.7
2823 Male, age 76, right hemisphere 23.6
2588 Male, age 74, left hemisphere 22.6
2725 Female, age 75, unknown 22.5
2584 Male, age 75, left hemisphere 17.5
Substantia nigra
nTPM: 21.1
1889 Female, age 72, unknown 24.5
2590 Female, age 75, unknown 23.0
1941 Male, age 53, unknown 21.9
1916 Female, age 42, unknown 21.5
2241 Male, age 72, unknown 21.4
2409 Female, age 72, unknown 21.2
1851 Male, age 51, unknown 20.8
2699 Male, age 18, unknown 19.9
2665 Male, age 74, both hemispheres 18.7
2583 Male, age 75, right hemisphere 18.1
Superior colliculus
nTPM: 24.3
2261 Male, age 18, unknown 26.9
1913 Female, age 42, unknown 26.6
2087 Female, age 72, unknown 26.0
1995 Male, age 72, unknown 24.8
2668 Female, age 75, unknown 24.8
2587 Male, age 74, left hemisphere 24.5
1895 Male, age 76, right hemisphere 24.0
1839 Male, age 51, unknown 23.3
1796 Male, age 53, unknown 22.6
2664 Male, age 75, both hemispheres 19.2
Ventral tegmental area
nTPM: 24.5
2410 Female, age 72, unknown 25.9
2218 Male, age 76, both hemispheres 25.7
2223 Female, age 72, unknown 25.7
2021 Male, age 53, unknown 24.3
1942 Male, age 51, unknown 23.0
1915 Female, age 42, unknown 22.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 21.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 21.5
Samples: 139

Max nTPM: 48.0
Min nTPM: 11.1
Std nTPM: 5.9
Median nTPM: 20.0
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 48.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 42.3
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 38.0
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 37.7
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 36.6
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 34.6
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 33.3
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 32.9
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 31.9
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 30.8
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 30.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 80.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 80.2
FF:10158-103A5 76 years, female 80.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 24.9
Pig sample Sample description nTPM
Midbrain
nTPM: 25.0
Samples: 4

Max nTPM: 27.7
Min nTPM: 23.6
Sample A Female 23.8
Sample B Female 23.6
Sample C Male 27.7
Sample D Male 24.7
Periaqueductal gray
nTPM: 22.3
Samples: 3

Max nTPM: 25.3
Min nTPM: 20.5
Sample B Female 20.5
Sample C Male 25.3
Sample D Male 21.1
Substantia nigra
nTPM: 23.7
Samples: 4

Max nTPM: 29.5
Min nTPM: 17.8
Sample A Female 28.6
Sample B Female 19.0
Sample C Male 29.5
Sample D Male 17.8
Superior colliculi
nTPM: 24.0
Samples: 4

Max nTPM: 26.9
Min nTPM: 18.2
Sample A Female 26.6
Sample B Female 18.2
Sample C Male 26.9
Sample D Male 24.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 28.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 28.3
Samples: 4

Max nTPM: 28.8
Min nTPM: 27.5
Sample A Male 27.5
Sample B Male 28.3
Sample C Female 28.8
Sample D Female 28.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
73930852 Antisense, RP_051214_04_D05, Mouse strain C57BL/6J (56 days, male) 0.1
70474761 Antisense, RP_050614_04_H10, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.