MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:95.0 nTPM
HPA:95.0 nTPM
GTEx:89.8 nTPM
FANTOM5:175.8 Scaled Tags Per Million
Pig:104.5 nTPM
Mouse:137.3 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 95.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 79.9
2019 Male, age 18, unknown 97.3
1830 Male, age 51, unknown 88.3
1870 Female, age 42, unknown 86.7
1833 Male, age 53, unknown 85.7
2411 Female, age 72, unknown 84.6
2666 Male, age 74, left hemisphere 76.5
1827 Male, age 72, unknown 75.1
2586 Male, age 75, left hemisphere 72.2
2828 Female, age 72, unknown 70.3
2219 Male, age 76, both hemispheres 62.4
Dorsal raphe nucleus
nTPM: 67.7
2750 Male, age 76, both hemispheres 87.6
1828 Male, age 53, unknown 68.2
2016 Female, age 72, unknown 66.6
2047 Male, age 72, unknown 60.0
2298 Female, age 72, unknown 56.3
Inferior colliculus
nTPM: 70.4
1890 Male, age 53, unknown 73.3
2849 Male, age 72, unknown 70.8
1848 Female, age 42, unknown 69.7
2097 Female, age 72, unknown 67.6
Median raphe nucleus
nTPM: 68.0
2220 Male, age 76, midline 68.0
Pedunculopontine tegmental nucleus
nTPM: 74.8
2334 Male, age 80, both hemispheres 80.9
1921 Female, age 85, both hemispheres 72.9
2338 Male, age 61, both hemispheres 70.6
Periaquaductal grey, anterior
nTPM: 63.0
2502 Female, age 75, unknown 66.4
1947 Male, age 18, unknown 64.9
1795 Male, age 51, unknown 57.6
Periaquaductal grey, dorsal
nTPM: 59.2
2464 Female, age 72, unknown 66.1
1831 Male, age 72, unknown 64.3
2850 Male, age 76, both hemispheres 56.5
1840 Male, age 53, unknown 49.9
Periaquaductal grey, lateral
nTPM: 61.7
2272 Male, age 74, both hemispheres 68.5
2053 Male, age 18, unknown 62.7
2140 Male, age 76, both hemispheres 53.9
Pretectal area
nTPM: 70.9
1817 Female, age 42, unknown 82.4
2007 Male, age 72, unknown 79.7
1815 Male, age 53, unknown 79.4
2407 Male, age 75, both hemispheres 72.8
2316 Male, age 76, right hemisphere 70.8
1944 Female, age 72, unknown 70.2
1816 Male, age 51, unknown 68.2
2273 Male, age 74, both hemispheres 67.3
2825 Male, age 18, unknown 65.5
2667 Female, age 75, unknown 64.0
2224 Female, age 72, unknown 59.2
Red nucleus
nTPM: 95.0
1865 Male, age 51, unknown 110.5
1821 Female, age 72, unknown 106.4
2823 Male, age 76, right hemisphere 101.5
2785 Male, age 18, unknown 99.1
1904 Male, age 53, unknown 98.6
2503 Female, age 72, unknown 97.4
1954 Female, age 42, unknown 96.2
2227 Male, age 72, unknown 92.8
2769 Male, age 72, unknown 90.8
2588 Male, age 74, left hemisphere 87.6
2725 Female, age 75, unknown 84.6
2584 Male, age 75, left hemisphere 74.2
Substantia nigra
nTPM: 70.0
2590 Female, age 75, unknown 77.8
1889 Female, age 72, unknown 77.3
1941 Male, age 53, unknown 76.8
2583 Male, age 75, right hemisphere 76.8
2409 Female, age 72, unknown 72.0
1851 Male, age 51, unknown 69.4
2665 Male, age 74, both hemispheres 65.7
2699 Male, age 18, unknown 63.7
2241 Male, age 72, unknown 62.7
1916 Female, age 42, unknown 57.9
Superior colliculus
nTPM: 75.7
1895 Male, age 76, right hemisphere 87.1
2587 Male, age 74, left hemisphere 84.5
1913 Female, age 42, unknown 84.2
1995 Male, age 72, unknown 82.0
2668 Female, age 75, unknown 77.1
1839 Male, age 51, unknown 73.8
1796 Male, age 53, unknown 69.0
2087 Female, age 72, unknown 68.1
2261 Male, age 18, unknown 65.7
2664 Male, age 75, both hemispheres 65.0
Ventral tegmental area
nTPM: 72.3
2223 Female, age 72, unknown 94.8
2410 Female, age 72, unknown 80.1
2218 Male, age 76, both hemispheres 67.5
1942 Male, age 51, unknown 64.6
1915 Female, age 42, unknown 63.7
2021 Male, age 53, unknown 63.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 89.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 89.8
Samples: 139

Max nTPM: 193.8
Min nTPM: 43.9
Std nTPM: 31.6
Median nTPM: 81.1
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 193.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 188.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 181.7
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 171.6
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 159.0
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 157.7
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 157.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 157.5
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 155.8
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 150.5
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 147.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 175.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 175.8
FF:10158-103A5 76 years, female 175.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 104.5
Pig sample Sample description nTPM
Midbrain
nTPM: 104.6
Samples: 4

Max nTPM: 182.2
Min nTPM: 69.4
Sample A Female 182.2
Sample B Female 87.4
Sample C Male 79.2
Sample D Male 69.4
Periaqueductal gray
nTPM: 60.3
Samples: 3

Max nTPM: 69.1
Min nTPM: 50.5
Sample B Female 69.1
Sample C Male 50.5
Sample D Male 61.3
Substantia nigra
nTPM: 83.9
Samples: 4

Max nTPM: 106.4
Min nTPM: 61.1
Sample A Female 98.1
Sample B Female 61.1
Sample C Male 70.0
Sample D Male 106.4
Superior colliculi
nTPM: 91.6
Samples: 4

Max nTPM: 112.8
Min nTPM: 63.9
Sample A Female 96.7
Sample B Female 63.9
Sample C Male 112.8
Sample D Male 93.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 137.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 137.3
Samples: 4

Max nTPM: 140.4
Min nTPM: 132.9
Sample A Male 137.6
Sample B Male 132.9
Sample C Female 140.4
Sample D Female 138.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
71763540 Antisense, RP_050921_02_B09, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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