BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:132.2 nTPM
HPA:132.2 nTPM
GTEx:55.6 nTPM
FANTOM5:329.4 Scaled Tags Per Million
Pig:111.9 nTPM
Mouse:29.1 nTPM
Allen mouse:3.0 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 132.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 59.5
2288 Male, age 75, left hemisphere 78.1
1781 Male, age 74, unknown 61.4
2846 Female, age 79, unknown 61.3
2481 Female, age 94, left hemisphere 59.3
1854 Male, age 80, left hemisphere 58.3
2289 Male, age 61, right hemisphere 55.2
2290 Female, age 72, unknown 55.1
1857 Female, age 85, left hemisphere 47.1
Claustrum
nTPM: 85.3
2292 Female, age 85, both hemispheres 124.8
1956 Male, age 74, unknown 108.4
2392 Female, age 94, both hemispheres 87.0
2196 Female, age 79, unknown 81.6
2198 Male, age 80, both hemispheres 78.4
2568 Male, age 61, both hemispheres 77.1
2284 Female, age 91, both hemispheres 71.7
2491 Male, age 75, both hemispheres 70.6
2645 Female, age 72, unknown 67.6
Globus pallidus, externus
nTPM: 131.2
2646 Male, age 61, right hemisphere 167.5
1996 Male, age 80, right hemisphere 137.8
2567 Female, age 72, unknown 136.1
2772 Female, age 79, unknown 118.1
2395 Male, age 75, both hemispheres 96.5
Globus pallidus, internus
nTPM: 132.2
2111 Female, age 85, right hemisphere 195.8
2778 Female, age 91, both hemispheres 153.4
2566 Female, age 72, unknown 138.7
2037 Male, age 80, right hemisphere 120.9
2287 Male, age 75, right hemisphere 118.3
1818 Male, age 74, unknown 116.7
2483 Female, age 94, right hemisphere 81.7
Nucleus accumbens
nTPM: 74.9
2391 Female, age 94, left hemisphere 115.0
2732 Male, age 80, right hemisphere 92.0
2698 Female, age 72, unknown 83.6
2286 Male, age 75, left hemisphere 74.1
1806 Female, age 85, left hemisphere 65.1
2824 Male, age 61, right hemisphere 63.5
1783 Male, age 74, unknown 60.6
1856 Female, age 91, right hemisphere 45.1
Nucleus basalis of Meynert
nTPM: 87.1
2569 Male, age 61, both hemispheres 138.3
2821 Male, age 75, both hemispheres 76.4
2393 Male, age 80, right hemisphere 67.5
2484 Female, age 94, left hemisphere 66.2
Nucleus of the diagonal band
nTPM: 45.8
1812 Female, age 91, both hemispheres 51.5
1979 Male, age 74, unknown 49.4
2029 Male, age 61, right hemisphere 45.8
2195 Female, age 85, both hemispheres 42.7
2775 Male, age 80, right hemisphere 39.6
Olfactory tubercle
nTPM: 49.3
2856 Male, age 75, right hemisphere 52.5
1998 Female, age 91, both hemispheres 50.5
1846 Male, age 80, right hemisphere 47.3
2487 Female, age 94, left hemisphere 47.0
Putamen
nTPM: 68.2
2647 Male, age 75, left hemisphere 81.3
2489 Female, age 72, unknown 78.7
1829 Male, age 74, unknown 76.5
2482 Female, age 94, left hemisphere 76.2
1937 Female, age 91, right hemisphere 63.3
2466 Female, age 79, unknown 59.2
1838 Male, age 80, right hemisphere 42.2
Septal nuclei
nTPM: 56.9
2394 Male, age 61, left hemisphere 86.2
2199 Male, age 80, right hemisphere 65.3
2059 Female, age 85, both hemispheres 59.8
2629 Female, age 94, right hemisphere 52.7
2009 Female, age 91, both hemispheres 48.4
2031 Female, age 72, unknown 45.1
1960 Male, age 74, unknown 41.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 55.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 42.6
Samples: 246

Max nTPM: 120.6
Min nTPM: 12.5
Std nTPM: 17.5
Median nTPM: 39.3
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 120.6
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 98.5
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 96.5
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 89.4
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 88.3
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 85.9
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 84.3
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 81.5
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 80.7
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 79.5
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 79.1
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 30.6
Samples: 246

Max nTPM: 190.7
Min nTPM: 9.3
Std nTPM: 18.6
Median nTPM: 26.4
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 190.7
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 120.2
GTEX-ZAB4-0011-R6a-SM-4SOKD 40-49 years, male 104.2
GTEX-1EN7A-0011-R6b-SM-9QEHW 40-49 years, male 86.6
GTEX-1H23P-0011-R6b-SM-A9G1H 60-69 years, male 86.3
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 85.2
GTEX-WL46-0011-R6A-SM-3LK6X 50-59 years, male 81.3
GTEX-YFC4-0011-R6b-SM-4V6E1 40-49 years, female 77.0
GTEX-1F48J-0011-R6a-SM-CJI2F 50-59 years, female 76.6
GTEX-1I1HK-0011-R6b-SM-CM2T9 60-69 years, male 76.6
GTEX-1IL2U-0011-R6a-SM-ARZLG 60-69 years, male 64.8
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Brain - Putamen (basal ganglia)
Average nTPM: 55.6
Samples: 205

Max nTPM: 213.6
Min nTPM: 16.1
Std nTPM: 23.8
Median nTPM: 53.6
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 213.6
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 125.3
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 122.2
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 116.0
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 113.0
GTEX-1I1GV-0011-R7a-SM-ARU6R 60-69 years, male 112.1
GTEX-14JG1-0011-R7b-SM-5YYAV 40-49 years, male 105.6
GTEX-WZTO-0011-R7B-SM-4E3IS 40-49 years, male 102.3
GTEX-13OW8-0011-R7a-SM-5L3FP 60-69 years, male 96.7
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 95.6
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 94.4
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 329.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 83.9
FF:10164-103B2 76 years, female 83.9
Globus pallidus
Scaled Tags Per Million: 329.4
FF:10175-103C4 60 years, female 357.5
FF:10161-103A8 76 years, female 301.3
Nucleus accumbens
Scaled Tags Per Million: 159.4
FF:10037-101F1 23-56 years, mixed 159.4
Putamen
Scaled Tags Per Million: 82.7
FF:10176-103C5 60 years, female 82.7

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 111.9
Pig sample Sample description nTPM
Caudate
nTPM: 44.6
Samples: 4

Max nTPM: 50.7
Min nTPM: 42.1
Sample A Female 50.7
Sample B Female 42.1
Sample C Male 42.1
Sample D Male 43.5
Putamen
nTPM: 111.9
Samples: 4

Max nTPM: 213.4
Min nTPM: 52.0
Sample A Female 213.4
Sample B Female 52.0
Sample C Male 61.3
Sample D Male 121.0
Septum
nTPM: 72.4
Samples: 4

Max nTPM: 83.1
Min nTPM: 53.0
Sample A Female 77.5
Sample B Female 53.0
Sample C Male 76.1
Sample D Male 83.1
Ventral pallidum
nTPM: 102.7
Samples: 4

Max nTPM: 150.9
Min nTPM: 44.9
Sample A Female 44.9
Sample B Female 76.8
Sample C Male 150.9
Sample D Male 138.3

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 29.1
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 29.1
Samples: 4

Max nTPM: 33.1
Min nTPM: 24.6
Sample A Male 30.6
Sample B Male 33.1
Sample C Female 27.9
Sample D Female 24.6
Septum
nTPM: 27.7
Samples: 4

Max nTPM: 35.9
Min nTPM: 19.5
Sample A Male 19.5
Sample B Male 24.4
Sample C Female 31.1
Sample D Female 35.9
Ventral forebrain
nTPM: 16.9
Samples: 4

Max nTPM: 18.6
Min nTPM: 16.0
Sample A Male 16.6
Sample B Male 16.0
Sample C Female 18.6
Sample D Female 16.4

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 3.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 2.7
70946147 Antisense, RP_050310_01_D11, Mouse strain C57BL/6J (56 days, male) 2.7
Pallidum
Expression energy: 3.0
70946147 Antisense, RP_050310_01_D11, Mouse strain C57BL/6J (56 days, male) 3.0

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The Human Protein Atlas

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