MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:115.2 nTPM
HPA:115.2 nTPM
GTEx:74.1 nTPM
FANTOM5:522.5 Scaled Tags Per Million
Pig:148.5 nTPM
Mouse:37.5 nTPM
Allen mouse:4.6 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 115.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 96.8
1830 Male, age 51, unknown 114.7
2411 Female, age 72, unknown 113.1
1833 Male, age 53, unknown 110.3
1870 Female, age 42, unknown 109.9
2019 Male, age 18, unknown 103.0
2828 Female, age 72, unknown 96.7
2586 Male, age 75, left hemisphere 88.5
2219 Male, age 76, both hemispheres 78.3
2666 Male, age 74, left hemisphere 77.6
1827 Male, age 72, unknown 76.3
Dorsal raphe nucleus
nTPM: 78.6
2750 Male, age 76, both hemispheres 118.5
2016 Female, age 72, unknown 82.7
1828 Male, age 53, unknown 73.9
2047 Male, age 72, unknown 59.4
2298 Female, age 72, unknown 58.3
Inferior colliculus
nTPM: 73.4
2849 Male, age 72, unknown 78.6
1848 Female, age 42, unknown 76.3
1890 Male, age 53, unknown 73.8
2097 Female, age 72, unknown 64.7
Median raphe nucleus
nTPM: 68.5
2220 Male, age 76, midline 68.5
Pedunculopontine tegmental nucleus
nTPM: 83.3
2334 Male, age 80, both hemispheres 90.2
2338 Male, age 61, both hemispheres 83.3
1921 Female, age 85, both hemispheres 76.3
Periaquaductal grey, anterior
nTPM: 68.6
2502 Female, age 75, unknown 75.6
1947 Male, age 18, unknown 69.1
1795 Male, age 51, unknown 61.0
Periaquaductal grey, dorsal
nTPM: 62.3
2464 Female, age 72, unknown 82.7
1831 Male, age 72, unknown 61.7
2850 Male, age 76, both hemispheres 54.3
1840 Male, age 53, unknown 50.6
Periaquaductal grey, lateral
nTPM: 67.6
2272 Male, age 74, both hemispheres 73.0
2053 Male, age 18, unknown 71.4
2140 Male, age 76, both hemispheres 58.5
Pretectal area
nTPM: 73.5
2316 Male, age 76, right hemisphere 101.0
1815 Male, age 53, unknown 88.8
2407 Male, age 75, both hemispheres 85.8
2667 Female, age 75, unknown 75.4
2825 Male, age 18, unknown 74.3
1817 Female, age 42, unknown 73.3
2007 Male, age 72, unknown 70.0
2273 Male, age 74, both hemispheres 68.1
2224 Female, age 72, unknown 64.2
1944 Female, age 72, unknown 55.4
1816 Male, age 51, unknown 51.8
Red nucleus
nTPM: 115.2
1865 Male, age 51, unknown 136.8
1904 Male, age 53, unknown 136.5
2823 Male, age 76, right hemisphere 129.4
2769 Male, age 72, unknown 124.6
2227 Male, age 72, unknown 123.4
2785 Male, age 18, unknown 120.9
1821 Female, age 72, unknown 117.9
2503 Female, age 72, unknown 111.0
1954 Female, age 42, unknown 107.1
2588 Male, age 74, left hemisphere 100.2
2584 Male, age 75, left hemisphere 88.4
2725 Female, age 75, unknown 86.5
Substantia nigra
nTPM: 78.3
2583 Male, age 75, right hemisphere 95.7
2590 Female, age 75, unknown 93.6
1851 Male, age 51, unknown 90.7
2409 Female, age 72, unknown 86.0
2699 Male, age 18, unknown 84.6
1889 Female, age 72, unknown 75.6
2241 Male, age 72, unknown 68.3
1941 Male, age 53, unknown 64.3
2665 Male, age 74, both hemispheres 62.7
1916 Female, age 42, unknown 61.9
Superior colliculus
nTPM: 87.8
1913 Female, age 42, unknown 129.1
1995 Male, age 72, unknown 125.0
1895 Male, age 76, right hemisphere 99.7
1839 Male, age 51, unknown 92.1
2587 Male, age 74, left hemisphere 86.5
1796 Male, age 53, unknown 77.8
2668 Female, age 75, unknown 75.7
2664 Male, age 75, both hemispheres 68.2
2087 Female, age 72, unknown 63.3
2261 Male, age 18, unknown 60.7
Ventral tegmental area
nTPM: 85.0
2410 Female, age 72, unknown 99.2
2223 Female, age 72, unknown 97.5
2021 Male, age 53, unknown 82.4
2218 Male, age 76, both hemispheres 77.8
1942 Male, age 51, unknown 77.7
1915 Female, age 42, unknown 75.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 74.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 74.1
Samples: 139

Max nTPM: 276.4
Min nTPM: 27.2
Std nTPM: 42.7
Median nTPM: 60.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 276.4
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 255.7
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 231.2
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 197.9
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 194.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 172.2
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 159.7
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 159.0
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 147.5
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 141.3
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 139.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 522.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 522.5
FF:10158-103A5 76 years, female 522.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 148.5
Pig sample Sample description nTPM
Midbrain
nTPM: 138.5
Samples: 4

Max nTPM: 249.5
Min nTPM: 77.6
Sample A Female 249.5
Sample B Female 138.3
Sample C Male 77.6
Sample D Male 88.4
Periaqueductal gray
nTPM: 101.7
Samples: 3

Max nTPM: 116.5
Min nTPM: 83.4
Sample B Female 116.5
Sample C Male 83.4
Sample D Male 105.3
Substantia nigra
nTPM: 148.5
Samples: 4

Max nTPM: 214.4
Min nTPM: 95.6
Sample A Female 161.3
Sample B Female 95.6
Sample C Male 122.5
Sample D Male 214.4
Superior colliculi
nTPM: 110.9
Samples: 4

Max nTPM: 138.0
Min nTPM: 55.3
Sample A Female 138.0
Sample B Female 55.3
Sample C Male 112.9
Sample D Male 137.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 37.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 37.6
Samples: 4

Max nTPM: 38.4
Min nTPM: 35.8
Sample A Male 38.4
Sample B Male 35.8
Sample C Female 37.8
Sample D Female 38.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.6
70946147 Antisense, RP_050310_01_D11, Mouse strain C57BL/6J (56 days, male) 4.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.