BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:92.5 nTPM
HPA:92.5 nTPM
GTEx:107.3 nTPM
FANTOM5:154.4 Scaled Tags Per Million
Pig:23.2 nTPM
Mouse:11.0 nTPM
Allen mouse:0.1 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 92.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 88.4
2288 Male, age 75, left hemisphere 93.5
1854 Male, age 80, left hemisphere 91.4
1857 Female, age 85, left hemisphere 89.8
2846 Female, age 79, unknown 88.3
1781 Male, age 74, unknown 88.2
2290 Female, age 72, unknown 88.0
2289 Male, age 61, right hemisphere 84.8
2481 Female, age 94, left hemisphere 83.0
Claustrum
nTPM: 88.4
2392 Female, age 94, both hemispheres 92.3
2491 Male, age 75, both hemispheres 90.9
1956 Male, age 74, unknown 90.5
2196 Female, age 79, unknown 90.3
2198 Male, age 80, both hemispheres 90.0
2284 Female, age 91, both hemispheres 86.9
2568 Male, age 61, both hemispheres 85.6
2292 Female, age 85, both hemispheres 85.5
2645 Female, age 72, unknown 83.8
Globus pallidus, externus
nTPM: 89.6
2772 Female, age 79, unknown 99.7
1996 Male, age 80, right hemisphere 93.6
2395 Male, age 75, both hemispheres 91.1
2646 Male, age 61, right hemisphere 83.9
2567 Female, age 72, unknown 80.0
Globus pallidus, internus
nTPM: 92.5
2287 Male, age 75, right hemisphere 103.3
2778 Female, age 91, both hemispheres 96.1
1818 Male, age 74, unknown 91.7
2483 Female, age 94, right hemisphere 91.7
2111 Female, age 85, right hemisphere 90.4
2037 Male, age 80, right hemisphere 89.8
2566 Female, age 72, unknown 84.3
Nucleus accumbens
nTPM: 89.0
1806 Female, age 85, left hemisphere 92.6
2391 Female, age 94, left hemisphere 91.2
1856 Female, age 91, right hemisphere 90.8
2286 Male, age 75, left hemisphere 90.1
1783 Male, age 74, unknown 89.3
2698 Female, age 72, unknown 89.1
2824 Male, age 61, right hemisphere 86.2
2732 Male, age 80, right hemisphere 83.0
Nucleus basalis of Meynert
nTPM: 88.2
2484 Female, age 94, left hemisphere 90.3
2821 Male, age 75, both hemispheres 90.3
2393 Male, age 80, right hemisphere 89.7
2569 Male, age 61, both hemispheres 82.6
Nucleus of the diagonal band
nTPM: 90.7
2775 Male, age 80, right hemisphere 95.1
2195 Female, age 85, both hemispheres 93.3
1812 Female, age 91, both hemispheres 91.1
2029 Male, age 61, right hemisphere 88.0
1979 Male, age 74, unknown 85.8
Olfactory tubercle
nTPM: 89.5
1846 Male, age 80, right hemisphere 94.1
1998 Female, age 91, both hemispheres 92.3
2856 Male, age 75, right hemisphere 86.0
2487 Female, age 94, left hemisphere 85.4
Putamen
nTPM: 87.2
2466 Female, age 79, unknown 91.0
1838 Male, age 80, right hemisphere 89.8
1937 Female, age 91, right hemisphere 89.4
2482 Female, age 94, left hemisphere 88.1
1829 Male, age 74, unknown 86.1
2489 Female, age 72, unknown 83.0
2647 Male, age 75, left hemisphere 83.0
Septal nuclei
nTPM: 88.9
2031 Female, age 72, unknown 95.6
1960 Male, age 74, unknown 94.9
2009 Female, age 91, both hemispheres 87.6
2394 Male, age 61, left hemisphere 87.5
2199 Male, age 80, right hemisphere 86.4
2059 Female, age 85, both hemispheres 85.7
2629 Female, age 94, right hemisphere 84.2

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 107.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 91.9
Samples: 246

Max nTPM: 198.1
Min nTPM: 47.0
Std nTPM: 24.5
Median nTPM: 87.2
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 198.1
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 178.1
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 169.5
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 167.0
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 160.9
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 160.5
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 157.1
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 152.6
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 152.3
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 149.8
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 147.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 103.1
Samples: 246

Max nTPM: 236.2
Min nTPM: 46.4
Std nTPM: 25.6
Median nTPM: 99.6
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 236.2
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 233.2
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 176.0
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 165.3
GTEX-1H3O1-0011-R6b-SM-CL54U 60-69 years, male 159.8
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 159.1
GTEX-1LVA9-0011-R6a-SM-EYYWH 50-59 years, male 157.0
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 152.8
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 152.1
GTEX-1HUB1-0011-R6b-SM-ARU6W 60-69 years, male 151.5
GTEX-1E1VI-0011-R6a-SM-9OSVJ 50-59 years, male 149.8
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Brain - Putamen (basal ganglia)
Average nTPM: 107.3
Samples: 205

Max nTPM: 245.5
Min nTPM: 63.0
Std nTPM: 24.8
Median nTPM: 103.4
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 245.5
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 181.1
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 163.5
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 163.4
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 163.1
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 161.6
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 160.8
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 154.3
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 154.3
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 153.6
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 152.3
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 154.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 100.5
FF:10164-103B2 76 years, female 100.5
Globus pallidus
Scaled Tags Per Million: 154.4
FF:10175-103C4 60 years, female 210.7
FF:10161-103A8 76 years, female 98.1
Nucleus accumbens
Scaled Tags Per Million: 144.1
FF:10037-101F1 23-56 years, mixed 144.1
Putamen
Scaled Tags Per Million: 137.9
FF:10176-103C5 60 years, female 137.9

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 23.2
Pig sample Sample description nTPM
Caudate
nTPM: 17.3
Samples: 4

Max nTPM: 20.1
Min nTPM: 14.2
Sample A Female 18.0
Sample B Female 16.8
Sample C Male 20.1
Sample D Male 14.2
Putamen
nTPM: 19.2
Samples: 4

Max nTPM: 23.0
Min nTPM: 16.1
Sample A Female 19.8
Sample B Female 16.1
Sample C Male 23.0
Sample D Male 17.7
Septum
nTPM: 23.2
Samples: 4

Max nTPM: 26.2
Min nTPM: 21.2
Sample A Female 23.2
Sample B Female 22.1
Sample C Male 26.2
Sample D Male 21.2
Ventral pallidum
nTPM: 18.8
Samples: 4

Max nTPM: 22.1
Min nTPM: 16.6
Sample A Female 16.6
Sample B Female 19.4
Sample C Male 22.1
Sample D Male 16.9

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 11.0
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 10.0
Samples: 4

Max nTPM: 10.4
Min nTPM: 9.2
Sample A Male 9.2
Sample B Male 10.1
Sample C Female 10.4
Sample D Female 10.2
Septum
nTPM: 11.0
Samples: 4

Max nTPM: 12.8
Min nTPM: 9.9
Sample A Male 9.9
Sample B Male 11.1
Sample C Female 12.8
Sample D Female 10.2
Ventral forebrain
nTPM: 10.0
Samples: 4

Max nTPM: 10.6
Min nTPM: 9.0
Sample A Male 9.0
Sample B Male 10.0
Sample C Female 10.6
Sample D Female 10.5

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.1
68795466 Antisense, RP_050118_01_H03, Mouse strain C57BL/6J (56 days, male) 0.1
Pallidum
Expression energy: 0.1
68795466 Antisense, RP_050118_01_H03, Mouse strain C57BL/6J (56 days, male) 0.1

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