BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:45.5 nTPM
HPA:45.5 nTPM
GTEx:50.8 nTPM
FANTOM5:27.7 Scaled Tags Per Million
Pig:35.2 nTPM
Mouse:119.7 nTPM
Allen mouse:7.9 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA002891Antibody CAB003765
Glial cells MediumLow
Neuronal cells MediumHigh





BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 45.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 43.0
2290 Female, age 72, unknown 45.5
1857 Female, age 85, left hemisphere 45.3
2846 Female, age 79, unknown 44.2
1781 Male, age 74, unknown 43.9
1854 Male, age 80, left hemisphere 42.9
2481 Female, age 94, left hemisphere 41.5
2288 Male, age 75, left hemisphere 40.9
2289 Male, age 61, right hemisphere 40.3
Claustrum
nTPM: 42.2
2284 Female, age 91, both hemispheres 44.1
2292 Female, age 85, both hemispheres 44.0
2568 Male, age 61, both hemispheres 43.6
2645 Female, age 72, unknown 43.5
2198 Male, age 80, both hemispheres 43.3
2491 Male, age 75, both hemispheres 42.6
2196 Female, age 79, unknown 41.4
1956 Male, age 74, unknown 40.7
2392 Female, age 94, both hemispheres 36.9
Globus pallidus, externus
nTPM: 45.5
2567 Female, age 72, unknown 49.3
1996 Male, age 80, right hemisphere 47.7
2772 Female, age 79, unknown 44.9
2646 Male, age 61, right hemisphere 43.6
2395 Male, age 75, both hemispheres 41.9
Globus pallidus, internus
nTPM: 44.6
2483 Female, age 94, right hemisphere 48.5
2566 Female, age 72, unknown 46.3
2037 Male, age 80, right hemisphere 44.2
2287 Male, age 75, right hemisphere 44.0
2111 Female, age 85, right hemisphere 43.7
1818 Male, age 74, unknown 43.6
2778 Female, age 91, both hemispheres 41.8
Nucleus accumbens
nTPM: 42.0
1783 Male, age 74, unknown 46.4
1806 Female, age 85, left hemisphere 43.9
2732 Male, age 80, right hemisphere 43.2
1856 Female, age 91, right hemisphere 42.4
2286 Male, age 75, left hemisphere 41.8
2698 Female, age 72, unknown 41.7
2391 Female, age 94, left hemisphere 38.5
2824 Male, age 61, right hemisphere 37.8
Nucleus basalis of Meynert
nTPM: 42.5
2569 Male, age 61, both hemispheres 45.8
2484 Female, age 94, left hemisphere 42.5
2393 Male, age 80, right hemisphere 41.3
2821 Male, age 75, both hemispheres 40.4
Nucleus of the diagonal band
nTPM: 43.5
2195 Female, age 85, both hemispheres 45.0
1979 Male, age 74, unknown 44.7
2775 Male, age 80, right hemisphere 44.3
2029 Male, age 61, right hemisphere 41.9
1812 Female, age 91, both hemispheres 41.5
Olfactory tubercle
nTPM: 42.5
2487 Female, age 94, left hemisphere 44.0
1846 Male, age 80, right hemisphere 43.2
1998 Female, age 91, both hemispheres 42.2
2856 Male, age 75, right hemisphere 40.6
Putamen
nTPM: 45.3
2489 Female, age 72, unknown 51.1
2647 Male, age 75, left hemisphere 49.2
2482 Female, age 94, left hemisphere 45.6
2466 Female, age 79, unknown 45.4
1829 Male, age 74, unknown 44.2
1937 Female, age 91, right hemisphere 41.2
1838 Male, age 80, right hemisphere 40.8
Septal nuclei
nTPM: 43.4
1960 Male, age 74, unknown 48.0
2059 Female, age 85, both hemispheres 46.9
2199 Male, age 80, right hemisphere 44.0
2031 Female, age 72, unknown 41.8
2009 Female, age 91, both hemispheres 41.0
2394 Male, age 61, left hemisphere 41.0
2629 Female, age 94, right hemisphere 41.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 50.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 48.0
Samples: 246

Max nTPM: 64.9
Min nTPM: 25.3
Std nTPM: 6.8
Median nTPM: 48.0
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 64.9
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 63.3
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 62.4
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 62.0
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 61.9
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 61.0
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 60.9
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 60.8
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 60.8
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 60.3
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 59.9
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 47.9
Samples: 246

Max nTPM: 81.7
Min nTPM: 30.5
Std nTPM: 7.7
Median nTPM: 47.2
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 81.7
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 79.7
GTEX-1HBPM-0011-R6b-SM-ARU73 60-69 years, female 78.0
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 70.0
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 69.7
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 67.3
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 65.5
GTEX-11NV4-0011-R6a-SM-57WD5 60-69 years, male 64.7
GTEX-139TS-0011-R6a-SM-5J2OB 60-69 years, male 63.7
GTEX-1H4P4-0011-R6a-SM-ARZLR 50-59 years, male 61.6
GTEX-1A8G6-0011-R6b-SM-7P8PE 60-69 years, male 61.1
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Brain - Putamen (basal ganglia)
Average nTPM: 50.8
Samples: 205

Max nTPM: 74.7
Min nTPM: 29.8
Std nTPM: 6.9
Median nTPM: 50.5
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 74.7
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 70.5
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 67.4
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 67.0
GTEX-145MG-0011-R7b-SM-5P9JY 50-59 years, male 66.0
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 65.9
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 65.2
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 63.8
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 63.7
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 63.3
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 62.6
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 27.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 27.7
FF:10164-103B2 76 years, female 27.7
Globus pallidus
Scaled Tags Per Million: 20.2
FF:10161-103A8 76 years, female 30.1
FF:10175-103C4 60 years, female 10.2
Nucleus accumbens
Scaled Tags Per Million: 26.5
FF:10037-101F1 23-56 years, mixed 26.5
Putamen
Scaled Tags Per Million: 18.9
FF:10176-103C5 60 years, female 18.9

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 35.2
Pig sample Sample description nTPM
Caudate
nTPM: 33.7
Samples: 4

Max nTPM: 40.6
Min nTPM: 28.9
Sample A Female 30.2
Sample B Female 40.6
Sample C Male 35.0
Sample D Male 28.9
Putamen
nTPM: 30.5
Samples: 4

Max nTPM: 41.8
Min nTPM: 21.7
Sample A Female 41.8
Sample B Female 26.9
Sample C Male 21.7
Sample D Male 31.4
Septum
nTPM: 35.0
Samples: 4

Max nTPM: 43.0
Min nTPM: 20.6
Sample A Female 43.0
Sample B Female 35.9
Sample C Male 40.5
Sample D Male 20.6
Ventral pallidum
nTPM: 35.3
Samples: 4

Max nTPM: 44.5
Min nTPM: 28.9
Sample A Female 28.9
Sample B Female 37.6
Sample C Male 44.5
Sample D Male 30.0

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 119.7
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 119.8
Samples: 4

Max nTPM: 127.3
Min nTPM: 110.9
Sample A Male 117.8
Sample B Male 127.3
Sample C Female 110.9
Sample D Female 123.0
Septum
nTPM: 85.6
Samples: 4

Max nTPM: 91.8
Min nTPM: 82.3
Sample A Male 91.8
Sample B Male 85.6
Sample C Female 82.5
Sample D Female 82.3
Ventral forebrain
nTPM: 105.5
Samples: 4

Max nTPM: 110.7
Min nTPM: 100.5
Sample A Male 104.8
Sample B Male 110.7
Sample C Female 106.0
Sample D Female 100.5

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 7.9
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 7.0
75988255 Antisense, RP_060606_02_E05, Mouse strain C57BL/6J (56 days, male) 7.0
Pallidum
Expression energy: 7.9
75988255 Antisense, RP_060606_02_E05, Mouse strain C57BL/6J (56 days, male) 7.9

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The Human Protein Atlas

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