MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:1065.6 nTPM
HPA:1065.6 nTPM
GTEx:1108.8 nTPM
FANTOM5:104.5 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 1065.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 1054.7
2586 Male, age 75, left hemisphere 1087.2
2666 Male, age 74, left hemisphere 1078.8
2828 Female, age 72, unknown 1072.3
2411 Female, age 72, unknown 1072.2
1870 Female, age 42, unknown 1061.5
1833 Male, age 53, unknown 1045.3
1827 Male, age 72, unknown 1042.6
1830 Male, age 51, unknown 1037.8
2019 Male, age 18, unknown 1027.0
2219 Male, age 76, both hemispheres 1021.9
Dorsal raphe nucleus
nTPM: 1045.5
2016 Female, age 72, unknown 1066.5
2298 Female, age 72, unknown 1061.4
2750 Male, age 76, both hemispheres 1044.3
1828 Male, age 53, unknown 1035.3
2047 Male, age 72, unknown 1020.0
Inferior colliculus
nTPM: 1039.6
1890 Male, age 53, unknown 1051.9
2849 Male, age 72, unknown 1043.0
2097 Female, age 72, unknown 1032.7
1848 Female, age 42, unknown 1030.9
Median raphe nucleus
nTPM: 1023.5
2220 Male, age 76, midline 1023.5
Pedunculopontine tegmental nucleus
nTPM: 1046.5
2338 Male, age 61, both hemispheres 1064.0
2334 Male, age 80, both hemispheres 1060.3
1921 Female, age 85, both hemispheres 1015.3
Periaquaductal grey, anterior
nTPM: 1042.0
2502 Female, age 75, unknown 1071.0
1795 Male, age 51, unknown 1037.2
1947 Male, age 18, unknown 1017.9
Periaquaductal grey, dorsal
nTPM: 1042.1
1840 Male, age 53, unknown 1053.1
2464 Female, age 72, unknown 1048.5
1831 Male, age 72, unknown 1047.4
2850 Male, age 76, both hemispheres 1019.3
Periaquaductal grey, lateral
nTPM: 1023.4
2053 Male, age 18, unknown 1050.5
2140 Male, age 76, both hemispheres 1020.4
2272 Male, age 74, both hemispheres 999.4
Pretectal area
nTPM: 1025.4
2316 Male, age 76, right hemisphere 1057.1
2825 Male, age 18, unknown 1043.4
1815 Male, age 53, unknown 1032.4
2007 Male, age 72, unknown 1031.6
2224 Female, age 72, unknown 1030.7
1817 Female, age 42, unknown 1027.7
2407 Male, age 75, both hemispheres 1026.2
1816 Male, age 51, unknown 1020.1
2667 Female, age 75, unknown 1012.6
2273 Male, age 74, both hemispheres 1000.5
1944 Female, age 72, unknown 997.2
Red nucleus
nTPM: 1065.6
2503 Female, age 72, unknown 1114.6
2769 Male, age 72, unknown 1085.4
2227 Male, age 72, unknown 1080.5
1865 Male, age 51, unknown 1076.6
1821 Female, age 72, unknown 1075.6
1904 Male, age 53, unknown 1070.5
2584 Male, age 75, left hemisphere 1067.6
2588 Male, age 74, left hemisphere 1054.9
2725 Female, age 75, unknown 1046.6
2785 Male, age 18, unknown 1044.5
1954 Female, age 42, unknown 1041.6
2823 Male, age 76, right hemisphere 1028.3
Substantia nigra
nTPM: 1053.8
2699 Male, age 18, unknown 1109.8
1851 Male, age 51, unknown 1093.5
2665 Male, age 74, both hemispheres 1089.1
2590 Female, age 75, unknown 1063.7
2583 Male, age 75, right hemisphere 1050.3
1916 Female, age 42, unknown 1047.0
2409 Female, age 72, unknown 1034.2
1889 Female, age 72, unknown 1027.1
1941 Male, age 53, unknown 1015.4
2241 Male, age 72, unknown 1008.0
Superior colliculus
nTPM: 1053.3
1995 Male, age 72, unknown 1091.6
2587 Male, age 74, left hemisphere 1082.8
2664 Male, age 75, both hemispheres 1080.7
1913 Female, age 42, unknown 1073.9
1796 Male, age 53, unknown 1055.9
1839 Male, age 51, unknown 1046.4
2668 Female, age 75, unknown 1041.3
2261 Male, age 18, unknown 1023.9
1895 Male, age 76, right hemisphere 1019.2
2087 Female, age 72, unknown 1017.3
Ventral tegmental area
nTPM: 1056.8
1915 Female, age 42, unknown 1084.8
2021 Male, age 53, unknown 1070.4
2410 Female, age 72, unknown 1065.9
2223 Female, age 72, unknown 1053.9
1942 Male, age 51, unknown 1037.0
2218 Male, age 76, both hemispheres 1029.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 1108.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1108.8
Samples: 139

Max nTPM: 3069.2
Min nTPM: 369.8
Std nTPM: 409.9
Median nTPM: 1060.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 3069.2
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 2606.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 2496.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 1995.1
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 1980.1
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 1951.5
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 1849.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 1764.9
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 1743.6
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 1660.6
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 1657.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 104.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 104.5
FF:10158-103A5 76 years, female 104.5

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The Human Protein Atlas

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