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RPL13A
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BRAIN PONS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Pons
PONS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:1119.3 nTPM
HPA:1119.3 nTPM
FANTOM5:86.8 Scaled Tags Per Million

PONS - HPA Brain RNA-seq
Max nTPM 1119.3
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 1065.9
2090 Male, age 80, both hemispheres 1085.8
2188 Female, age 91, both hemispheres 1070.0
2301 Female, age 85, both hemispheres 1055.6
1984 Male, age 76, both hemispheres 1052.1
Dorsal cochlear nucleus
nTPM: 1073.3
2802 Male, age 74, right hemisphere 1121.2
2378 Male, age 80, both hemispheres 1084.2
2187 Female, age 91, both hemispheres 1063.1
2370 Male, age 61, both hemispheres 1054.0
2058 Male, age 76, both hemispheres 1043.9
Dorsal tegmental nucleus
nTPM: 1058.4
2326 Male, age 74, both hemispheres 1074.3
2083 Male, age 80, both hemispheres 1070.6
2358 Male, age 61, both hemispheres 1059.2
1936 Male, age 76, left hemisphere 1029.6
Dorsolateral tegmental area
nTPM: 1061.4
2337 Male, age 61, both hemispheres 1111.4
2654 Male, age 80, both hemispheres 1085.4
2751 Female, age 85, both hemispheres 1051.2
2360 Male, age 74, both hemispheres 1049.4
2141 Male, age 76, both hemispheres 1009.4
Kolliker-Fuse nucleus
nTPM: 1066.1
2315 Male, age 76, right hemisphere 1103.4
2793 Female, age 91, left hemisphere 1059.7
2163 Male, age 80, both hemispheres 1035.3
Lateral lemniscal nuclei
nTPM: 1020.0
2746 Female, age 85, left hemisphere 1042.1
2320 Female, age 91, left hemisphere 1029.1
2169 Male, age 76, both hemispheres 1023.0
2453 Male, age 74, right hemisphere 1004.6
2036 Male, age 80, both hemispheres 1001.3
Lateral parabrachial nucleus
nTPM: 1072.1
2792 Male, age 76, both hemispheres 1103.2
2013 Male, age 80, both hemispheres 1088.5
2139 Female, age 85, right hemisphere 1048.5
2790 Male, age 61, both hemispheres 1048.3
Lateral vestibular nucleus
nTPM: 1051.1
2311 Male, age 80, both hemispheres 1092.1
2184 Male, age 76, both hemispheres 1010.1
Locus coeruleus
nTPM: 1018.0
2720 Male, age 74, both hemispheres 1054.8
2317 Female, age 72, unknown 1027.8
2162 Male, age 80, both hemispheres 1027.0
2123 Female, age 91, both hemispheres 1025.5
1980 Male, age 76, both hemispheres 1007.7
2014 Male, age 55, unknown 1004.4
2788 Male, age 74, unknown 978.8
Medial olivary nucleus
nTPM: 1119.3
1943 Male, age 61, both hemispheres 1146.1
1962 Male, age 76, both hemispheres 1130.2
2138 Female, age 91, both hemispheres 1110.6
2851 Male, age 80, both hemispheres 1090.2
Medial parabrachial nucleus
nTPM: 1045.5
2170 Female, age 91, both hemispheres 1078.2
2463 Female, age 85, right hemisphere 1063.2
2854 Male, age 80, both hemispheres 1044.2
2786 Male, age 76, both hemispheres 1026.3
2156 Male, age 61, both hemispheres 1015.5
Medial periolivary nuclei
nTPM: 1033.7
2063 Male, age 76, both hemispheres 1064.3
2081 Male, age 80, both hemispheres 1048.1
2458 Female, age 91, both hemispheres 1034.7
2791 Male, age 74, right hemisphere 1024.9
2171 Female, age 85, both hemispheres 996.3
Motor facial nucleus
nTPM: 1034.6
2795 Female, age 91, both hemispheres 1075.2
2062 Male, age 76, both hemispheres 1044.7
2126 Male, age 61, both hemispheres 1038.2
2697 Female, age 85, both hemispheres 1032.7
2365 Male, age 74, right hemisphere 1028.8
2327 Male, age 80, both hemispheres 988.2
Motor trigeminal nucleus
nTPM: 1036.0
2560 Male, age 74, both hemispheres 1050.6
2309 Male, age 76, both hemispheres 1042.0
2335 Male, age 61, both hemispheres 1038.7
2321 Female, age 91, both hemispheres 1037.9
2079 Male, age 80, both hemispheres 1010.5
Nuclei of the trapezoid body
nTPM: 1031.6
1983 Male, age 76, both hemispheres 1079.1
2368 Female, age 91, both hemispheres 1034.0
2166 Male, age 80, both hemispheres 1029.6
2735 Female, age 85, both hemispheres 1011.3
2159 Male, age 61, both hemispheres 1003.9
Paramedian reticular nucleus
nTPM: 1034.8
2057 Male, age 80, both hemispheres 1053.5
2313 Male, age 61, both hemispheres 1032.3
2052 Male, age 76, both hemispheres 1029.0
2050 Female, age 85, both hemispheres 1024.4
Pontine nuclei
nTPM: 1038.0
2319 Female, age 91, both hemispheres 1061.6
1968 Male, age 76, left hemisphere 1055.8
1863 Male, age 55, unknown 1040.0
2787 Female, age 85, both hemispheres 1039.9
2109 Female, age 72, unknown 1030.3
2115 Male, age 80, left hemisphere 1028.7
2454 Male, age 74, left hemisphere 1026.2
2727 Male, age 61, right hemisphere 1021.8
Pontine raphe nucleus
nTPM: 1031.8
2853 Male, age 76, midline 1038.3
2122 Female, age 85, midline 1025.2
Posteroventral cochlear nucleus
nTPM: 1074.5
2371 Male, age 61, both hemispheres 1120.6
2341 Male, age 80, both hemispheres 1089.0
2135 Female, age 91, both hemispheres 1077.4
2070 Male, age 76, both hemispheres 1045.2
2752 Female, age 85, both hemispheres 1040.6
Principal sensory trigeminal nucleus
nTPM: 1019.7
2367 Female, age 91, left hemisphere 1030.7
2158 Male, age 61, both hemispheres 1025.1
2324 Male, age 76, both hemispheres 1021.9
2008 Male, age 80, left hemisphere 1001.0
Reticular pontine nucleus, caudal
nTPM: 1034.8
2092 Male, age 76, both hemispheres 1061.1
2559 Male, age 74, both hemispheres 1060.6
2457 Female, age 91, both hemispheres 1027.0
2332 Male, age 80, right hemisphere 990.6
Reticular pontine nucleus, oral
nTPM: 1034.3
1939 Male, age 80, both hemispheres 1051.3
2366 Female, age 91, both hemispheres 1049.4
2167 Male, age 76, both hemispheres 1049.1
2012 Female, age 85, both hemispheres 1022.7
2361 Male, age 74, both hemispheres 998.9
Reticulotegmental nucleus
nTPM: 1034.4
2452 Male, age 74, both hemispheres 1064.1
2322 Female, age 91, both hemispheres 1037.7
2333 Male, age 80, both hemispheres 1020.8
2325 Male, age 76, both hemispheres 1014.9
Spinal trigeminal nucleus, oral
nTPM: 1032.0
1978 Male, age 76, both hemispheres 1044.9
2164 Male, age 80, both hemispheres 1034.6
2737 Female, age 85, both hemispheres 1016.4
Subcoeruleus area
nTPM: 1042.2
2451 Male, age 74, both hemispheres 1100.4
2369 Female, age 85, left hemisphere 1060.4
1958 Male, age 80, both hemispheres 1029.5
2323 Female, age 91, left hemisphere 1012.2
2089 Male, age 76, left hemisphere 1008.4
Superior olive
nTPM: 1029.8
2020 Male, age 76, both hemispheres 1066.8
2561 Female, age 91, both hemispheres 1048.5
2364 Male, age 74, right hemisphere 1018.5
2329 Male, age 80, right hemisphere 1010.4
1875 Female, age 85, both hemispheres 1004.7
Superior vestibular nucleus
nTPM: 1067.0
2015 Male, age 80, both hemispheres 1090.6
2383 Male, age 74, both hemispheres 1059.5
2061 Male, age 76, both hemispheres 1050.8
Ventral periolivary nuclei
nTPM: 1032.2
2023 Male, age 76, both hemispheres 1063.2
2794 Female, age 91, left hemisphere 1038.1
2165 Male, age 80, both hemispheres 1015.6
2130 Female, age 85, both hemispheres 1011.8
Ventrolateral tegmental area, A5 NE cell group
nTPM: 1039.1
2456 Female, age 91, both hemispheres 1060.8
2359 Male, age 61, both hemispheres 1054.2
2161 Male, age 80, both hemispheres 1050.0
1959 Male, age 76, both hemispheres 1037.3
2840 Female, age 85, both hemispheres 1022.0
2449 Male, age 74, both hemispheres 1010.2

PONS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

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Max Scaled Tags Per Million 86.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 86.8
FF:10182-103D2 60 years, female 99.0
FF:10165-103B3 76 years, female 74.7
Pons
Scaled Tags Per Million: 67.0
FF:10033-101E6 18-54 years, mixed 67.0

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