We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
SH3BGRL3
SECTIONS
  • TISSUE
  • BRAIN
  • SINGLE CELL TYPE
  • TISSUE CELL TYPE
  • PATHOLOGY
  • DISEASE
  • IMMUNE CELL
  • BLOOD PROTEIN
  • SUBCELLULAR
  • CELL LINE
  • STRUCTURE
  • METABOLIC
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
  • SARS-COV-2
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Patient ID
Tissue
Category
Cluster
Reliability
Brain region
Category
Brain region
Category
Brain region
Category
Reliability
Cell type
Category
Cluster
Tissue
Cell type
Enrichment
Cancer
Prognosis
Cancer
Category
Cell type
Category
Cell lineage
Category
Cluster
Annotation
Disease
Location
Searches
Location
Cell line
Type
Phase
Reliability
Cancer type
Category
Cluster
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Protein structure
In atlas
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • TISSUE CELL

  • PATHOLOGY

  • DISEASE

  • IMMUNE

  • BLOOD

  • SUBCELL

  • CELL LINE

  • STRUCTURE

  • METABOLIC

  • SH3BGRL3
BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:351.0 nTPM
HPA:351.0 nTPM
FANTOM5:245.1 Scaled Tags Per Million
Pig:316.8 nTPM
Mouse:159.1 nTPM
Allen mouse:3.5 Expression energy

THALAMUS - HPA Brain RNA-seq
Max nTPM 351.0
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 351.0
2396 Male, age 61, right hemisphere 448.0
2032 Female, age 42, unknown 317.8
2497 Male, age 66, unknown 287.3
Centromedial thalamic nucleus
nTPM: 302.0
2401 Male, age 76, right hemisphere 305.7
2279 Female, age 85, left hemisphere 298.2
Habenula
nTPM: 290.5
2276 Male, age 66, unknown 300.9
2203 Male, age 61, left hemisphere 291.7
1957 Male, age 80, both hemispheres 289.0
2252 Male, age 62, unknown 280.3
Lateral geniculate body
nTPM: 305.5
2035 Female, age 72, unknown 322.4
1953 Male, age 62, unknown 321.6
2399 Male, age 61, left hemisphere 313.9
2106 Female, age 67, right hemisphere 313.5
2841 Male, age 80, both hemispheres 298.6
2659 Male, age 66, unknown 294.7
2857 Male, age 74, right hemisphere 293.1
2575 Female, age 94, right hemisphere 286.3
Lateral thalamic nuclei
nTPM: 298.0
2577 Male, age 74, both hemispheres 308.1
1903 Male, age 76, left hemisphere 297.6
2765 Female, age 67, both hemispheres 296.8
2573 Female, age 94, left hemisphere 295.4
2661 Female, age 72, unknown 291.9
Medial dorsal thalamic nucleus
nTPM: 297.5
1971 Male, age 61, right hemisphere 334.2
2572 Female, age 94, right hemisphere 326.3
1859 Male, age 76, both hemispheres 307.8
1810 Male, age 48, unknown 303.9
2498 Male, age 66, unknown 302.5
2576 Male, age 74, both hemispheres 296.5
1930 Female, age 42, unknown 292.0
2283 Male, age 80, right hemisphere 290.3
2039 Female, age 72, unknown 288.9
2026 Male, age 62, unknown 284.9
2492 Male, age 75, right hemisphere 282.5
2660 Female, age 72, unknown 281.9
2402 Female, age 67, both hemispheres 275.9
Medial geniculate body
nTPM: 290.3
1811 Female, age 42, unknown 307.7
2207 Male, age 80, right hemisphere 298.0
2217 Female, age 72, unknown 296.8
2650 Female, age 94, left hemisphere 291.0
2657 Male, age 74, right hemisphere 287.0
2049 Male, age 76, both hemispheres 283.3
2571 Male, age 75, right hemisphere 268.4
Nucleus reuniens
nTPM: 294.0
2210 Female, age 85, left hemisphere 296.3
2212 Female, age 67, left hemisphere 296.0
2205 Male, age 80, left hemisphere 289.8
Nucleus rhomboideus
nTPM: 298.9
2213 Female, age 67, left hemisphere 300.8
2280 Female, age 85, left hemisphere 300.1
2206 Male, age 80, both hemispheres 295.6
Posterior thalamic nucleus
nTPM: 298.2
2649 Female, age 94, both hemispheres 323.7
2266 Male, age 76, right hemisphere 306.6
2655 Male, age 74, right hemisphere 287.0
2495 Female, age 67, right hemisphere 275.4
Pulvinar
nTPM: 302.8
2398 Male, age 61, left hemisphere 318.6
1972 Male, age 62, unknown 314.0
1899 Female, age 42, unknown 309.6
2214 Male, age 76, right hemisphere 305.8
1932 Male, age 80, right hemisphere 304.3
1929 Male, age 48, unknown 299.2
2724 Male, age 74, right hemisphere 299.2
2582 Female, age 72, unknown 295.3
2496 Female, age 67, right hemisphere 291.6
2499 Male, age 66, unknown 290.8
Subthalamic nucleus
nTPM: 293.9
2124 Male, age 62, unknown 312.3
2275 Male, age 66, unknown 311.1
2658 Male, age 74, both hemispheres 302.4
2282 Male, age 61, both hemispheres 296.4
2406 Female, age 72, unknown 293.2
2779 Female, age 42, unknown 283.5
2216 Male, age 48, unknown 276.5
2056 Female, age 72, unknown 275.7
Ventral posterolateral thalamic nucleus
nTPM: 304.1
2397 Male, age 61, right hemisphere 337.4
2740 Male, age 76, right hemisphere 323.6
2578 Male, age 74, both hemispheres 305.3
2197 Male, age 80, both hemispheres 291.0
2581 Female, age 72, unknown 288.0
2570 Male, age 75, right hemisphere 279.4
Ventral posteromedial thalamic nucleus
nTPM: 300.9
2202 Male, age 61, left hemisphere 322.3
2653 Male, age 74, both hemispheres 319.0
2127 Male, age 76, right hemisphere 294.4
2758 Male, age 80, both hemispheres 287.9
2281 Male, age 75, right hemisphere 281.2
Ventral thalamic nuclei
nTPM: 300.3
1860 Male, age 76, both hemispheres 318.4
1845 Male, age 48, unknown 316.5
2652 Male, age 74, left hemisphere 302.5
1912 Female, age 42, unknown 299.2
2858 Female, age 72, unknown 298.2
2580 Male, age 66, unknown 295.8
2204 Male, age 80, both hemispheres 293.2
2285 Male, age 62, unknown 290.9
2291 Female, age 72, unknown 288.3
Ventromedial nucleus
nTPM: 265.5
1982 Female, age 72, unknown 270.6
1822 Female, age 42, unknown 260.5
Zona incerta
nTPM: 289.2
2215 Male, age 66, unknown 304.8
2822 Male, age 74, right hemisphere 299.7
2208 Male, age 80, right hemisphere 287.2
2663 Female, age 72, unknown 277.7
2403 Male, age 62, unknown 276.6

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 245.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 245.1
FF:10154-103A1 76 years, female 245.1

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 316.8
Pig sample Sample description nTPM
Thalamus
nTPM: 316.8
Samples: 4

Max nTPM: 429.1
Min nTPM: 199.5
Sample A Female 368.3
Sample B Female 199.5
Sample C Male 270.3
Sample D Male 429.1

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 159.1
Mouse sample Sample description nTPM
Thalamus
nTPM: 159.1
Samples: 4

Max nTPM: 184.6
Min nTPM: 149.1
Sample A Male 151.5
Sample B Male 149.1
Sample C Female 184.6
Sample D Female 151.0

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 3.5
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 3.5
69873708 Antisense, RP_050512_01_G10, Mouse strain C57BL/6J (56 days, male) 3.5

Contact

  • NEWS ARTICLES
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.