MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:340.4 nTPM
HPA:340.4 nTPM
GTEx:159.5 nTPM
FANTOM5:287.3 Scaled Tags Per Million
Pig:347.7 nTPM
Mouse:133.5 nTPM
Allen mouse:3.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 340.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 289.1
2019 Male, age 18, unknown 314.2
2411 Female, age 72, unknown 299.4
2219 Male, age 76, both hemispheres 297.2
2666 Male, age 74, left hemisphere 295.7
2828 Female, age 72, unknown 290.8
1830 Male, age 51, unknown 285.3
1833 Male, age 53, unknown 283.9
1870 Female, age 42, unknown 281.0
1827 Male, age 72, unknown 277.3
2586 Male, age 75, left hemisphere 266.0
Dorsal raphe nucleus
nTPM: 300.2
2750 Male, age 76, both hemispheres 313.1
2047 Male, age 72, unknown 311.2
2298 Female, age 72, unknown 304.6
1828 Male, age 53, unknown 296.4
2016 Female, age 72, unknown 275.7
Inferior colliculus
nTPM: 279.9
1890 Male, age 53, unknown 286.5
2097 Female, age 72, unknown 286.1
2849 Male, age 72, unknown 274.7
1848 Female, age 42, unknown 272.5
Median raphe nucleus
nTPM: 340.4
2220 Male, age 76, midline 340.4
Pedunculopontine tegmental nucleus
nTPM: 317.5
2338 Male, age 61, both hemispheres 358.1
2334 Male, age 80, both hemispheres 313.0
1921 Female, age 85, both hemispheres 281.6
Periaquaductal grey, anterior
nTPM: 283.1
1795 Male, age 51, unknown 289.1
1947 Male, age 18, unknown 281.5
2502 Female, age 75, unknown 278.7
Periaquaductal grey, dorsal
nTPM: 279.6
2850 Male, age 76, both hemispheres 296.5
2464 Female, age 72, unknown 276.3
1831 Male, age 72, unknown 274.1
1840 Male, age 53, unknown 271.3
Periaquaductal grey, lateral
nTPM: 287.1
2272 Male, age 74, both hemispheres 312.7
2140 Male, age 76, both hemispheres 284.4
2053 Male, age 18, unknown 264.3
Pretectal area
nTPM: 295.7
2007 Male, age 72, unknown 319.3
1817 Female, age 42, unknown 318.9
1944 Female, age 72, unknown 309.4
1815 Male, age 53, unknown 307.9
2273 Male, age 74, both hemispheres 300.5
2667 Female, age 75, unknown 296.2
1816 Male, age 51, unknown 295.5
2224 Female, age 72, unknown 286.1
2407 Male, age 75, both hemispheres 281.0
2825 Male, age 18, unknown 269.7
2316 Male, age 76, right hemisphere 268.6
Red nucleus
nTPM: 289.8
2785 Male, age 18, unknown 315.8
1865 Male, age 51, unknown 297.8
2725 Female, age 75, unknown 294.9
2823 Male, age 76, right hemisphere 294.7
1904 Male, age 53, unknown 292.1
2503 Female, age 72, unknown 290.6
1954 Female, age 42, unknown 289.9
2769 Male, age 72, unknown 284.5
2227 Male, age 72, unknown 283.6
1821 Female, age 72, unknown 281.2
2588 Male, age 74, left hemisphere 278.8
2584 Male, age 75, left hemisphere 273.9
Substantia nigra
nTPM: 319.9
1916 Female, age 42, unknown 378.9
1851 Male, age 51, unknown 339.4
2699 Male, age 18, unknown 336.0
1941 Male, age 53, unknown 330.2
1889 Female, age 72, unknown 317.0
2241 Male, age 72, unknown 316.9
2409 Female, age 72, unknown 305.1
2665 Male, age 74, both hemispheres 302.8
2590 Female, age 75, unknown 289.4
2583 Male, age 75, right hemisphere 283.2
Superior colliculus
nTPM: 285.9
2668 Female, age 75, unknown 306.5
2087 Female, age 72, unknown 298.1
2587 Male, age 74, left hemisphere 296.1
1913 Female, age 42, unknown 292.7
1995 Male, age 72, unknown 287.8
1796 Male, age 53, unknown 281.8
2261 Male, age 18, unknown 281.5
1839 Male, age 51, unknown 272.4
1895 Male, age 76, right hemisphere 271.8
2664 Male, age 75, both hemispheres 270.6
Ventral tegmental area
nTPM: 311.6
1915 Female, age 42, unknown 329.2
2218 Male, age 76, both hemispheres 328.7
2410 Female, age 72, unknown 322.0
2223 Female, age 72, unknown 300.1
2021 Male, age 53, unknown 295.4
1942 Male, age 51, unknown 294.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 159.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 159.5
Samples: 139

Max nTPM: 297.5
Min nTPM: 61.2
Std nTPM: 44.9
Median nTPM: 152.0
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 297.5
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 279.2
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 260.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 255.6
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 248.2
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 246.9
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 242.9
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 242.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 235.5
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 232.5
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 230.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 287.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 287.3
FF:10158-103A5 76 years, female 287.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 347.7
Pig sample Sample description nTPM
Midbrain
nTPM: 318.8
Samples: 4

Max nTPM: 460.5
Min nTPM: 226.3
Sample A Female 460.5
Sample B Female 347.4
Sample C Male 241.0
Sample D Male 226.3
Periaqueductal gray
nTPM: 250.7
Samples: 3

Max nTPM: 267.3
Min nTPM: 233.3
Sample B Female 233.3
Sample C Male 251.4
Sample D Male 267.3
Substantia nigra
nTPM: 347.7
Samples: 4

Max nTPM: 470.2
Min nTPM: 241.0
Sample A Female 394.7
Sample B Female 241.0
Sample C Male 284.8
Sample D Male 470.2
Superior colliculi
nTPM: 311.5
Samples: 4

Max nTPM: 409.5
Min nTPM: 161.5
Sample A Female 409.5
Sample B Female 161.5
Sample C Male 281.2
Sample D Male 393.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 133.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 133.5
Samples: 4

Max nTPM: 144.6
Min nTPM: 124.1
Sample A Male 144.6
Sample B Male 124.1
Sample C Female 126.8
Sample D Female 138.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.0
69873708 Antisense, RP_050512_01_G10, Mouse strain C57BL/6J (56 days, male) 3.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.