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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:289.8 nTPM
HPA:289.8 nTPM
GTEx:144.6 nTPM
FANTOM5:215.9 Scaled Tags Per Million
Pig:165.7 nTPM
Mouse:269.5 nTPM
Allen mouse:10.1 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 289.8
Sample id Sample description nTPM
Amygdala
nTPM: 289.8
2814 Male, age 76, right hemisphere 302.7
1987 Female, age 91, left hemisphere 291.5
2695 Female, age 67, right hemisphere 288.9
2514 Male, age 75, right hemisphere 286.7
2517 Female, age 94, left hemisphere 278.9
Basal amygdala
nTPM: 286.2
2110 Male, age 80, left hemisphere 314.1
1955 Male, age 76, both hemispheres 291.7
2243 Female, age 91, right hemisphere 286.4
2685 Female, age 94, left hemisphere 279.6
2609 Male, age 75, right hemisphere 278.0
2827 Female, age 67, right hemisphere 267.7
Central amygdala
nTPM: 288.5
2239 Male, age 80, left hemisphere 306.0
1905 Male, age 76, both hemispheres 296.8
2826 Female, age 94, left hemisphere 284.3
2515 Male, age 75, right hemisphere 279.7
2701 Female, age 91, right hemisphere 275.6
Corticomedial amygdala
nTPM: 285.1
2240 Male, age 76, both hemispheres 296.6
2242 Female, age 91, right hemisphere 290.8
2429 Female, age 94, left hemisphere 285.1
2829 Male, age 80, left hemisphere 284.5
2535 Female, age 67, right hemisphere 278.9
2428 Male, age 75, right hemisphere 274.9
Lateral amygdala
nTPM: 284.4
1883 Male, age 76, both hemispheres 301.6
2256 Male, age 80, left hemisphere 285.0
2534 Female, age 94, left hemisphere 282.6
2516 Male, age 75, right hemisphere 282.0
2255 Female, age 91, right hemisphere 279.9
2830 Female, age 67, right hemisphere 275.6
Stria terminalis, bed nucleus
nTPM: 284.6
1974 Female, age 91, both hemispheres 299.9
2486 Female, age 94, both hemispheres 281.8
2201 Male, age 74, unknown 272.1

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 144.6
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 144.6
Samples: 152

Max nTPM: 328.3
Min nTPM: 51.7
Std nTPM: 41.5
Median nTPM: 137.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 328.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 300.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 259.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 251.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 230.8
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 230.2
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 230.0
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 217.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 215.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 213.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 207.3
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 206.8
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 202.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 201.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 196.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 196.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 193.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 191.7
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 190.2
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 189.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 186.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 186.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 181.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 181.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 180.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 180.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 180.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 178.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 178.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 177.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 173.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 171.7
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 169.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 169.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 168.9
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 168.9
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 168.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 163.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 162.6
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 161.3
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 161.0
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 160.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 158.9
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 157.9
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 157.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 156.6
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 156.3
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 154.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 153.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 153.6
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 152.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 152.8
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 152.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 151.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 151.8
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 151.1
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 149.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 149.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 147.5
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 147.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 147.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 146.0
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 146.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 145.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 145.1
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 145.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 145.0
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 144.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 142.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 141.8
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 141.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 140.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 140.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 139.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 137.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 137.2
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 136.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 136.3
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 135.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 135.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 135.4
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 134.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 133.8
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 133.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 132.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 132.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 131.8
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 131.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 131.2
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 130.7
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 130.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 130.3
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 130.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 129.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 129.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 128.1
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 128.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 128.1
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 127.9
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 126.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 125.6
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 124.9
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 124.7
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 124.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 122.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 121.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 121.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 121.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 120.6
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 120.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 119.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 119.4
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 119.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 119.0
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 118.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 116.8
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 116.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 114.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 113.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 112.9
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 112.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 109.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 109.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 109.3
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 108.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 108.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 107.3
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 106.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 105.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 105.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 105.0
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 104.7
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 104.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 103.3
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 103.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 101.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 100.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 100.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 99.6
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 98.8
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 98.6
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 95.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 95.8
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 92.5
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 90.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 87.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 87.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 85.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 85.2
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 72.1
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 70.0
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 51.7
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 215.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 215.9
FF:10151-102I7 76 years, female 215.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 165.7
Pig sample Sample description nTPM
Amygdala
nTPM: 165.7
Samples: 4

Max nTPM: 228.2
Min nTPM: 123.3
Sample A Female 228.2
Sample B Female 174.5
Sample C Male 136.6
Sample D Male 123.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 269.5
Mouse sample Sample description nTPM
Amygdala
nTPM: 269.5
Samples: 4

Max nTPM: 294.3
Min nTPM: 255.8
Sample A Male 261.1
Sample B Male 266.8
Sample C Female 294.3
Sample D Female 255.8

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 10.1
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 10.1
69873708 Antisense, RP_050512_01_G10, Mouse strain C57BL/6J (56 days, male) 10.1

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