We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
SH3BGRL3
SECTIONS
  • TISSUE
  • BRAIN
  • SINGLE CELL TYPE
  • TISSUE CELL TYPE
  • PATHOLOGY
  • DISEASE
  • IMMUNE CELL
  • BLOOD PROTEIN
  • SUBCELLULAR
  • CELL LINE
  • STRUCTURE
  • METABOLIC
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
  • SARS-COV-2
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Patient ID
Tissue
Category
Cluster
Reliability
Brain region
Category
Brain region
Category
Brain region
Category
Reliability
Cell type
Category
Cluster
Tissue
Cell type
Enrichment
Cancer
Prognosis
Cancer
Category
Cell type
Category
Cell lineage
Category
Cluster
Annotation
Disease
Location
Searches
Location
Cell line
Type
Phase
Reliability
Cancer type
Category
Cluster
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Protein structure
In atlas
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • TISSUE CELL

  • PATHOLOGY

  • DISEASE

  • IMMUNE

  • BLOOD

  • SUBCELL

  • CELL LINE

  • STRUCTURE

  • METABOLIC

  • SH3BGRL3
TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Squamous epithelial cells: Not detected
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:176.3 nTPM
GTEx:176.3 nTPM
FANTOM5:482.7 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA030848
Squamous epithelial cells Not detected



VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 176.3
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 176.3
Samples: 156

Max nTPM: 542.3
Min nTPM: 54.9
Std nTPM: 89.9
Median nTPM: 162.4
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 542.3
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 444.2
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 383.7
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 377.2
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 356.5
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 354.8
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 347.5
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 339.1
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 335.5
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 334.5
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 334.4
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 333.7
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 330.6
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 325.4
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 323.2
GTEX-11I78-2026-SM-5987C 50-59 years, female 322.3
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 311.2
GTEX-14PKU-1326-SM-6871B 40-49 years, female 304.9
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 304.8
GTEX-S341-1226-SM-4AD5S 40-49 years, female 301.6
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 296.6
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 292.7
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 292.2
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 287.9
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 281.5
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 281.0
GTEX-Y8LW-1426-SM-5RQJJ 50-59 years, female 280.1
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 279.1
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 273.4
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 263.1
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 261.7
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 260.4
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 256.8
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 231.5
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 230.4
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 225.3
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 221.6
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 221.0
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 215.7
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 208.1
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 206.3
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 205.2
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 204.3
GTEX-QCQG-1226-SM-48U23 50-59 years, female 204.3
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 203.8
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 199.8
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 198.8
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 198.3
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 197.3
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 196.6
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 193.8
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 193.6
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 189.4
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 188.7
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 186.4
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 185.0
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 184.7
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 184.3
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 184.3
GTEX-1C475-0526-SM-793AC 40-49 years, female 183.5
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 181.3
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 180.7
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 180.5
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 177.3
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 177.0
GTEX-14A5I-2726-SM-5SIB3 50-59 years, female 176.9
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 176.9
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 176.8
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 176.3
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 176.1
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 175.0
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 174.8
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 171.4
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 170.3
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 169.7
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 167.8
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 166.4
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 163.8
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 161.0
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 160.1
GTEX-16NPV-2526-SM-6M483 50-59 years, female 153.4
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 150.7
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 148.7
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 148.5
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 147.9
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 147.7
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 146.5
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 144.8
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 144.4
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 141.0
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 140.8
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 140.5
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 139.4
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 135.8
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 135.1
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 134.7
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 134.2
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 132.1
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 131.7
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 130.6
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 128.9
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 125.0
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 123.4
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 120.7
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 118.2
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 116.4
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 115.3
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 113.0
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 107.0
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 106.5
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 106.0
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 102.8
GTEX-S4UY-1326-SM-4AD4X 40-49 years, female 102.1
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 102.0
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 101.2
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 101.0
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 99.3
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 99.2
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 99.0
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 98.1
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 98.0
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 96.4
GTEX-Y114-1926-SM-4TT8J 50-59 years, female 95.0
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 94.9
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 94.3
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 94.3
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 93.9
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 93.6
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 93.5
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 92.0
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 91.2
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 89.6
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 89.2
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 87.8
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 87.7
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 85.1
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 84.4
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 84.2
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 83.8
GTEX-1HCU8-2026-SM-9YFLE 60-69 years, female 83.5
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 81.2
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 80.9
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 80.0
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 79.3
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 78.0
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 76.7
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 75.3
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 73.6
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 72.0
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 71.5
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 70.5
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 69.5
GTEX-147F3-1526-SM-5SIAK 50-59 years, female 68.8
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 68.5
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 62.0
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 54.9
Show allShow less

VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 482.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 482.7
FF:10204-103F6 68 years, female 482.7

Contact

  • NEWS ARTICLES
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.