BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: High
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:21.0 nTPM
HPA:21.0 nTPM
GTEx:26.1 nTPM
FANTOM5:42.9 Scaled Tags Per Million
Pig:6.7 nTPM
Mouse:6.5 nTPM
Allen mouse:0.1 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA059387
Glial cells High
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 21.0
Sample id Sample description nTPM
Caudate nucleus
nTPM: 19.7
2481 Female, age 94, left hemisphere 21.8
2288 Male, age 75, left hemisphere 20.4
2289 Male, age 61, right hemisphere 20.1
1781 Male, age 74, unknown 19.6
2846 Female, age 79, unknown 19.6
1854 Male, age 80, left hemisphere 19.3
2290 Female, age 72, unknown 18.7
1857 Female, age 85, left hemisphere 18.1
Claustrum
nTPM: 19.8
2198 Male, age 80, both hemispheres 21.8
2284 Female, age 91, both hemispheres 21.0
2491 Male, age 75, both hemispheres 20.8
2568 Male, age 61, both hemispheres 19.9
1956 Male, age 74, unknown 19.4
2292 Female, age 85, both hemispheres 18.9
2645 Female, age 72, unknown 18.9
2196 Female, age 79, unknown 18.8
2392 Female, age 94, both hemispheres 18.7
Globus pallidus, externus
nTPM: 21.0
1996 Male, age 80, right hemisphere 22.0
2772 Female, age 79, unknown 21.5
2395 Male, age 75, both hemispheres 20.8
2646 Male, age 61, right hemisphere 20.7
2567 Female, age 72, unknown 20.2
Globus pallidus, internus
nTPM: 20.8
2287 Male, age 75, right hemisphere 21.7
2483 Female, age 94, right hemisphere 21.1
2778 Female, age 91, both hemispheres 21.0
2037 Male, age 80, right hemisphere 20.8
2566 Female, age 72, unknown 20.8
1818 Male, age 74, unknown 20.5
2111 Female, age 85, right hemisphere 20.0
Nucleus accumbens
nTPM: 19.6
2732 Male, age 80, right hemisphere 21.0
2391 Female, age 94, left hemisphere 20.4
2286 Male, age 75, left hemisphere 20.1
1856 Female, age 91, right hemisphere 19.8
2824 Male, age 61, right hemisphere 19.7
1783 Male, age 74, unknown 18.9
2698 Female, age 72, unknown 18.7
1806 Female, age 85, left hemisphere 18.4
Nucleus basalis of Meynert
nTPM: 19.8
2569 Male, age 61, both hemispheres 20.9
2484 Female, age 94, left hemisphere 20.3
2821 Male, age 75, both hemispheres 19.5
2393 Male, age 80, right hemisphere 18.5
Nucleus of the diagonal band
nTPM: 18.8
1812 Female, age 91, both hemispheres 19.4
2775 Male, age 80, right hemisphere 19.2
2195 Female, age 85, both hemispheres 18.8
1979 Male, age 74, unknown 18.6
2029 Male, age 61, right hemisphere 17.8
Olfactory tubercle
nTPM: 19.3
1998 Female, age 91, both hemispheres 20.7
2856 Male, age 75, right hemisphere 19.0
1846 Male, age 80, right hemisphere 18.9
2487 Female, age 94, left hemisphere 18.8
Putamen
nTPM: 19.3
2466 Female, age 79, unknown 20.5
2647 Male, age 75, left hemisphere 20.3
2482 Female, age 94, left hemisphere 19.9
1937 Female, age 91, right hemisphere 19.5
1838 Male, age 80, right hemisphere 18.5
2489 Female, age 72, unknown 18.5
1829 Male, age 74, unknown 18.0
Septal nuclei
nTPM: 19.1
2031 Female, age 72, unknown 20.0
1960 Male, age 74, unknown 19.9
2629 Female, age 94, right hemisphere 19.1
2199 Male, age 80, right hemisphere 19.0
2009 Female, age 91, both hemispheres 18.9
2059 Female, age 85, both hemispheres 18.6
2394 Male, age 61, left hemisphere 17.9

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 26.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 22.9
Samples: 246

Max nTPM: 58.6
Min nTPM: 7.3
Std nTPM: 7.5
Median nTPM: 21.3
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 58.6
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 49.1
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 46.1
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 45.8
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 45.7
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 43.0
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 42.4
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 41.6
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 41.5
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 41.4
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 37.1
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 22.4
Samples: 246

Max nTPM: 57.6
Min nTPM: 8.8
Std nTPM: 7.4
Median nTPM: 20.5
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 57.6
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 44.4
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 44.1
GTEX-12ZZW-0011-R6a-SM-5DUVZ 50-59 years, male 43.7
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 43.6
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 43.1
GTEX-1BAJH-0011-R6b-SM-7MXT2 70-79 years, male 40.4
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 38.1
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 37.4
GTEX-13N1W-0011-R6a-SM-5MR43 70-79 years, male 36.2
GTEX-13JVG-0011-R6a-SM-5MR3E 60-69 years, male 36.1
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Brain - Putamen (basal ganglia)
Average nTPM: 26.1
Samples: 205

Max nTPM: 54.9
Min nTPM: 10.9
Std nTPM: 7.3
Median nTPM: 24.6
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 54.9
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 50.8
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 47.3
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 44.8
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 43.8
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 43.7
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 43.0
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 42.6
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 42.0
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 41.6
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 40.6
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 42.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 24.9
FF:10164-103B2 76 years, female 24.9
Globus pallidus
Scaled Tags Per Million: 42.9
FF:10175-103C4 60 years, female 50.5
FF:10161-103A8 76 years, female 35.4
Nucleus accumbens
Scaled Tags Per Million: 24.0
FF:10037-101F1 23-56 years, mixed 24.0
Putamen
Scaled Tags Per Million: 26.7
FF:10176-103C5 60 years, female 26.7

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 6.7
Pig sample Sample description nTPM
Caudate
nTPM: 6.6
Samples: 4

Max nTPM: 8.3
Min nTPM: 5.7
Sample A Female 5.7
Sample B Female 8.3
Sample C Male 6.6
Sample D Male 5.7
Putamen
nTPM: 6.7
Samples: 4

Max nTPM: 9.7
Min nTPM: 4.8
Sample A Female 4.8
Sample B Female 5.9
Sample C Male 9.7
Sample D Male 6.5
Septum
nTPM: 5.0
Samples: 4

Max nTPM: 5.7
Min nTPM: 4.4
Sample A Female 4.4
Sample B Female 5.2
Sample C Male 4.7
Sample D Male 5.7
Ventral pallidum
nTPM: 5.1
Samples: 4

Max nTPM: 5.5
Min nTPM: 4.3
Sample A Female 5.1
Sample B Female 5.4
Sample C Male 5.5
Sample D Male 4.3

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 6.5
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 5.6
Samples: 4

Max nTPM: 6.3
Min nTPM: 5.2
Sample A Male 5.5
Sample B Male 6.3
Sample C Female 5.2
Sample D Female 5.3
Septum
nTPM: 6.0
Samples: 4

Max nTPM: 6.1
Min nTPM: 5.9
Sample A Male 5.9
Sample B Male 6.1
Sample C Female 6.0
Sample D Female 6.1
Ventral forebrain
nTPM: 6.5
Samples: 4

Max nTPM: 7.5
Min nTPM: 6.1
Sample A Male 6.1
Sample B Male 7.5
Sample C Female 6.1
Sample D Female 6.4

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.1
100146081 Antisense, RP_110421_02_F07, Mouse strain C57BL/6J (56 days, male) 0.1
Pallidum
Expression energy: 0.1
100146081 Antisense, RP_110421_02_F07, Mouse strain C57BL/6J (56 days, male) 0.1

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