MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:22.3 nTPM
HPA:22.3 nTPM
GTEx:29.5 nTPM
FANTOM5:32.1 Scaled Tags Per Million
Pig:5.8 nTPM
Mouse:5.4 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 22.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 20.2
2219 Male, age 76, both hemispheres 21.8
2586 Male, age 75, left hemisphere 21.5
2411 Female, age 72, unknown 20.9
1827 Male, age 72, unknown 20.2
1870 Female, age 42, unknown 20.1
2828 Female, age 72, unknown 19.9
1833 Male, age 53, unknown 19.6
2019 Male, age 18, unknown 19.5
2666 Male, age 74, left hemisphere 19.3
1830 Male, age 51, unknown 18.7
Dorsal raphe nucleus
nTPM: 20.9
2047 Male, age 72, unknown 22.6
2750 Male, age 76, both hemispheres 21.9
2298 Female, age 72, unknown 21.1
1828 Male, age 53, unknown 20.2
2016 Female, age 72, unknown 19.0
Inferior colliculus
nTPM: 19.7
1890 Male, age 53, unknown 20.4
2097 Female, age 72, unknown 20.1
2849 Male, age 72, unknown 19.5
1848 Female, age 42, unknown 18.7
Median raphe nucleus
nTPM: 22.3
2220 Male, age 76, midline 22.3
Pedunculopontine tegmental nucleus
nTPM: 21.0
2334 Male, age 80, both hemispheres 23.1
2338 Male, age 61, both hemispheres 20.0
1921 Female, age 85, both hemispheres 19.8
Periaquaductal grey, anterior
nTPM: 19.8
1795 Male, age 51, unknown 20.4
1947 Male, age 18, unknown 19.7
2502 Female, age 75, unknown 19.4
Periaquaductal grey, dorsal
nTPM: 19.0
1831 Male, age 72, unknown 19.4
2464 Female, age 72, unknown 18.9
2850 Male, age 76, both hemispheres 18.9
1840 Male, age 53, unknown 18.8
Periaquaductal grey, lateral
nTPM: 19.1
2272 Male, age 74, both hemispheres 20.1
2053 Male, age 18, unknown 18.9
2140 Male, age 76, both hemispheres 18.2
Pretectal area
nTPM: 20.5
1944 Female, age 72, unknown 21.9
1815 Male, age 53, unknown 21.8
2007 Male, age 72, unknown 21.5
1817 Female, age 42, unknown 21.4
2667 Female, age 75, unknown 21.1
1816 Male, age 51, unknown 20.9
2273 Male, age 74, both hemispheres 20.3
2224 Female, age 72, unknown 20.0
2407 Male, age 75, both hemispheres 19.5
2825 Male, age 18, unknown 18.7
2316 Male, age 76, right hemisphere 18.5
Red nucleus
nTPM: 20.1
2503 Female, age 72, unknown 21.7
2725 Female, age 75, unknown 20.7
2584 Male, age 75, left hemisphere 20.5
2823 Male, age 76, right hemisphere 20.5
1904 Male, age 53, unknown 20.3
2785 Male, age 18, unknown 20.2
1954 Female, age 42, unknown 20.0
2769 Male, age 72, unknown 19.8
1821 Female, age 72, unknown 19.6
2588 Male, age 74, left hemisphere 19.6
1865 Male, age 51, unknown 19.5
2227 Male, age 72, unknown 19.1
Substantia nigra
nTPM: 21.4
1916 Female, age 42, unknown 27.3
2699 Male, age 18, unknown 23.1
1851 Male, age 51, unknown 22.8
2241 Male, age 72, unknown 21.1
1889 Female, age 72, unknown 21.0
1941 Male, age 53, unknown 20.3
2583 Male, age 75, right hemisphere 20.1
2409 Female, age 72, unknown 20.0
2590 Female, age 75, unknown 20.0
2665 Male, age 74, both hemispheres 18.3
Superior colliculus
nTPM: 19.4
1796 Male, age 53, unknown 21.0
2087 Female, age 72, unknown 20.8
2261 Male, age 18, unknown 20.3
2668 Female, age 75, unknown 19.7
1839 Male, age 51, unknown 19.3
1895 Male, age 76, right hemisphere 19.2
2587 Male, age 74, left hemisphere 18.9
1913 Female, age 42, unknown 18.5
1995 Male, age 72, unknown 18.2
2664 Male, age 75, both hemispheres 17.8
Ventral tegmental area
nTPM: 21.6
2218 Male, age 76, both hemispheres 23.6
1915 Female, age 42, unknown 22.9
2410 Female, age 72, unknown 22.5
1942 Male, age 51, unknown 21.2
2021 Male, age 53, unknown 19.6
2223 Female, age 72, unknown 19.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 29.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 29.5
Samples: 139

Max nTPM: 62.5
Min nTPM: 7.9
Std nTPM: 10.1
Median nTPM: 28.7
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 62.5
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 57.1
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 53.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 52.6
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 51.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 49.7
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 49.6
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 49.3
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 48.7
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 48.4
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 48.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 32.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 32.1
FF:10158-103A5 76 years, female 32.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 5.8
Pig sample Sample description nTPM
Midbrain
nTPM: 5.9
Samples: 4

Max nTPM: 8.1
Min nTPM: 4.1
Sample A Female 4.1
Sample B Female 4.1
Sample C Male 8.1
Sample D Male 7.1
Periaqueductal gray
nTPM: 3.4
Samples: 3

Max nTPM: 3.7
Min nTPM: 3.2
Sample B Female 3.3
Sample C Male 3.7
Sample D Male 3.2
Substantia nigra
nTPM: 5.3
Samples: 4

Max nTPM: 7.0
Min nTPM: 3.7
Sample A Female 6.8
Sample B Female 3.8
Sample C Male 7.0
Sample D Male 3.7
Superior colliculi
nTPM: 5.9
Samples: 4

Max nTPM: 7.7
Min nTPM: 3.8
Sample A Female 6.5
Sample B Female 3.8
Sample C Male 7.7
Sample D Male 5.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 5.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 5.4
Samples: 4

Max nTPM: 5.9
Min nTPM: 4.9
Sample A Male 5.9
Sample B Male 5.7
Sample C Female 4.9
Sample D Female 5.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
100146081 Antisense, RP_110421_02_F07, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.