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ATP1B1
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  • ATP1B1
BRAIN PONS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Pons
PONS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

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No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
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Consensus:540.2 nTPM
HPA:540.2 nTPM
FANTOM5:2217.2 Scaled Tags Per Million
Pig:544.9 nTPM
Allen mouse:19.6 Expression energy

PONS - HPA Brain RNA-seq
Max nTPM 540.2
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 296.2
2301 Female, age 85, both hemispheres 339.5
2188 Female, age 91, both hemispheres 331.1
1984 Male, age 76, both hemispheres 280.8
2090 Male, age 80, both hemispheres 233.4
Dorsal cochlear nucleus
nTPM: 237.1
2187 Female, age 91, both hemispheres 284.7
2802 Male, age 74, right hemisphere 249.3
2058 Male, age 76, both hemispheres 235.0
2378 Male, age 80, both hemispheres 217.1
2370 Male, age 61, both hemispheres 199.5
Dorsal tegmental nucleus
nTPM: 224.2
2326 Male, age 74, both hemispheres 276.8
2083 Male, age 80, both hemispheres 252.3
1936 Male, age 76, left hemisphere 208.4
2358 Male, age 61, both hemispheres 159.1
Dorsolateral tegmental area
nTPM: 224.9
2751 Female, age 85, both hemispheres 328.6
2654 Male, age 80, both hemispheres 256.9
2360 Male, age 74, both hemispheres 225.1
2141 Male, age 76, both hemispheres 210.2
2337 Male, age 61, both hemispheres 103.4
Kolliker-Fuse nucleus
nTPM: 264.7
2793 Female, age 91, left hemisphere 321.0
2163 Male, age 80, both hemispheres 287.7
2315 Male, age 76, right hemisphere 185.6
Lateral lemniscal nuclei
nTPM: 461.9
2453 Male, age 74, right hemisphere 513.4
2169 Male, age 76, both hemispheres 512.5
2036 Male, age 80, both hemispheres 506.5
2746 Female, age 85, left hemisphere 422.8
2320 Female, age 91, left hemisphere 354.3
Lateral parabrachial nucleus
nTPM: 295.7
2139 Female, age 85, right hemisphere 426.1
2013 Male, age 80, both hemispheres 318.4
2790 Male, age 61, both hemispheres 248.1
2792 Male, age 76, both hemispheres 190.1
Lateral vestibular nucleus
nTPM: 250.5
2184 Male, age 76, both hemispheres 271.1
2311 Male, age 80, both hemispheres 229.9
Locus coeruleus
nTPM: 399.9
2720 Male, age 74, both hemispheres 522.2
2014 Male, age 55, unknown 481.9
2123 Female, age 91, both hemispheres 465.1
2317 Female, age 72, unknown 393.8
2788 Male, age 74, unknown 366.1
2162 Male, age 80, both hemispheres 291.8
1980 Male, age 76, both hemispheres 278.1
Medial olivary nucleus
nTPM: 201.0
1962 Male, age 76, both hemispheres 205.7
1943 Male, age 61, both hemispheres 204.2
2851 Male, age 80, both hemispheres 203.6
2138 Female, age 91, both hemispheres 190.6
Medial parabrachial nucleus
nTPM: 274.6
2854 Male, age 80, both hemispheres 349.3
2170 Female, age 91, both hemispheres 309.8
2463 Female, age 85, right hemisphere 261.9
2156 Male, age 61, both hemispheres 230.7
2786 Male, age 76, both hemispheres 221.5
Medial periolivary nuclei
nTPM: 456.4
2171 Female, age 85, both hemispheres 666.1
2063 Male, age 76, both hemispheres 550.3
2791 Male, age 74, right hemisphere 457.6
2458 Female, age 91, both hemispheres 304.5
2081 Male, age 80, both hemispheres 303.7
Motor facial nucleus
nTPM: 433.2
2062 Male, age 76, both hemispheres 582.1
2365 Male, age 74, right hemisphere 522.2
2327 Male, age 80, both hemispheres 459.6
2697 Female, age 85, both hemispheres 406.0
2126 Male, age 61, both hemispheres 366.8
2795 Female, age 91, both hemispheres 262.1
Motor trigeminal nucleus
nTPM: 313.3
2079 Male, age 80, both hemispheres 414.0
2560 Male, age 74, both hemispheres 408.4
2321 Female, age 91, both hemispheres 287.5
2335 Male, age 61, both hemispheres 231.1
2309 Male, age 76, both hemispheres 225.7
Nuclei of the trapezoid body
nTPM: 540.2
2159 Male, age 61, both hemispheres 812.4
2735 Female, age 85, both hemispheres 654.1
1983 Male, age 76, both hemispheres 525.9
2166 Male, age 80, both hemispheres 383.0
2368 Female, age 91, both hemispheres 325.6
Paramedian reticular nucleus
nTPM: 393.4
2050 Female, age 85, both hemispheres 558.7
2313 Male, age 61, both hemispheres 390.9
2057 Male, age 80, both hemispheres 347.4
2052 Male, age 76, both hemispheres 276.7
Pontine nuclei
nTPM: 529.6
2727 Male, age 61, right hemisphere 840.9
2454 Male, age 74, left hemisphere 615.9
1863 Male, age 55, unknown 575.4
2787 Female, age 85, both hemispheres 552.5
2109 Female, age 72, unknown 552.2
1968 Male, age 76, left hemisphere 454.5
2319 Female, age 91, both hemispheres 350.8
2115 Male, age 80, left hemisphere 294.7
Pontine raphe nucleus
nTPM: 357.2
2122 Female, age 85, midline 488.7
2853 Male, age 76, midline 225.7
Posteroventral cochlear nucleus
nTPM: 278.9
2752 Female, age 85, both hemispheres 399.3
2070 Male, age 76, both hemispheres 293.3
2135 Female, age 91, both hemispheres 249.5
2341 Male, age 80, both hemispheres 247.3
2371 Male, age 61, both hemispheres 205.0
Principal sensory trigeminal nucleus
nTPM: 450.6
2158 Male, age 61, both hemispheres 691.1
2008 Male, age 80, left hemisphere 512.4
2367 Female, age 91, left hemisphere 357.6
2324 Male, age 76, both hemispheres 241.4
Reticular pontine nucleus, caudal
nTPM: 392.9
2332 Male, age 80, right hemisphere 464.5
2092 Male, age 76, both hemispheres 386.9
2457 Female, age 91, both hemispheres 363.4
2559 Male, age 74, both hemispheres 356.7
Reticular pontine nucleus, oral
nTPM: 392.6
2361 Male, age 74, both hemispheres 628.1
2012 Female, age 85, both hemispheres 452.0
2366 Female, age 91, both hemispheres 327.7
1939 Male, age 80, both hemispheres 298.3
2167 Male, age 76, both hemispheres 256.7
Reticulotegmental nucleus
nTPM: 324.0
2325 Male, age 76, both hemispheres 352.9
2452 Male, age 74, both hemispheres 334.3
2333 Male, age 80, both hemispheres 306.8
2322 Female, age 91, both hemispheres 301.9
Spinal trigeminal nucleus, oral
nTPM: 276.0
2737 Female, age 85, both hemispheres 326.5
2164 Male, age 80, both hemispheres 296.2
1978 Male, age 76, both hemispheres 205.4
Subcoeruleus area
nTPM: 305.8
1958 Male, age 80, both hemispheres 366.0
2089 Male, age 76, left hemisphere 358.8
2323 Female, age 91, left hemisphere 297.9
2369 Female, age 85, left hemisphere 289.0
2451 Male, age 74, both hemispheres 217.2
Superior olive
nTPM: 443.8
1875 Female, age 85, both hemispheres 584.1
2364 Male, age 74, right hemisphere 528.2
2329 Male, age 80, right hemisphere 400.2
2020 Male, age 76, both hemispheres 393.2
2561 Female, age 91, both hemispheres 313.0
Superior vestibular nucleus
nTPM: 242.0
2015 Male, age 80, both hemispheres 274.4
2383 Male, age 74, both hemispheres 247.7
2061 Male, age 76, both hemispheres 204.0
Ventral periolivary nuclei
nTPM: 453.2
2130 Female, age 85, both hemispheres 578.6
2165 Male, age 80, both hemispheres 521.4
2023 Male, age 76, both hemispheres 382.7
2794 Female, age 91, left hemisphere 330.1
Ventrolateral tegmental area, A5 NE cell group
nTPM: 369.8
2449 Male, age 74, both hemispheres 570.2
2840 Female, age 85, both hemispheres 391.5
1959 Male, age 76, both hemispheres 390.6
2161 Male, age 80, both hemispheres 358.4
2456 Female, age 91, both hemispheres 278.8
2359 Male, age 61, both hemispheres 229.1

PONS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 2217.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 1150.7
FF:10182-103D2 60 years, female 1448.8
FF:10165-103B3 76 years, female 852.5
Pons
Scaled Tags Per Million: 2217.2
FF:10033-101E6 18-54 years, mixed 2217.2

PONS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
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Average nTPM 544.9
Pig sample Sample description nTPM
Pons
nTPM: 544.9
Samples: 4

Max nTPM: 661.3
Min nTPM: 390.0
Sample A Female 644.5
Sample B Female 390.0
Sample C Male 483.6
Sample D Male 661.3

PONS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 19.6
Allen experiment id Experiment description Expression energy
Pons
Expression energy: 19.6
68546368 Antisense, RP_050120_02_D04, Mouse strain C57BL/6J (56 days, male) 21.2
70919203 Antisense, RP_050712_04_D08, Mouse strain C57BL/6J (56 days, male) 18.0

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The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.