MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:264.3 nTPM
HPA:264.3 nTPM
GTEx:351.0 nTPM
FANTOM5:705.5 Scaled Tags Per Million
Pig:586.3 nTPM
Mouse:1419.0 nTPM
Allen mouse:22.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 264.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 211.1
2019 Male, age 18, unknown 301.1
2411 Female, age 72, unknown 290.4
1827 Male, age 72, unknown 226.5
2219 Male, age 76, both hemispheres 225.4
1833 Male, age 53, unknown 201.4
1870 Female, age 42, unknown 196.2
1830 Male, age 51, unknown 193.7
2666 Male, age 74, left hemisphere 183.1
2828 Female, age 72, unknown 174.1
2586 Male, age 75, left hemisphere 119.3
Dorsal raphe nucleus
nTPM: 188.5
1828 Male, age 53, unknown 223.7
2750 Male, age 76, both hemispheres 216.2
2298 Female, age 72, unknown 200.1
2047 Male, age 72, unknown 169.8
2016 Female, age 72, unknown 132.8
Inferior colliculus
nTPM: 209.5
2097 Female, age 72, unknown 258.9
1848 Female, age 42, unknown 221.5
1890 Male, age 53, unknown 212.2
2849 Male, age 72, unknown 145.3
Median raphe nucleus
nTPM: 206.7
2220 Male, age 76, midline 206.7
Pedunculopontine tegmental nucleus
nTPM: 256.0
2334 Male, age 80, both hemispheres 277.6
1921 Female, age 85, both hemispheres 256.9
2338 Male, age 61, both hemispheres 233.6
Periaquaductal grey, anterior
nTPM: 189.4
1947 Male, age 18, unknown 221.3
1795 Male, age 51, unknown 174.7
2502 Female, age 75, unknown 172.2
Periaquaductal grey, dorsal
nTPM: 137.7
1831 Male, age 72, unknown 167.9
2464 Female, age 72, unknown 157.0
1840 Male, age 53, unknown 113.5
2850 Male, age 76, both hemispheres 112.5
Periaquaductal grey, lateral
nTPM: 159.1
2272 Male, age 74, both hemispheres 228.3
2053 Male, age 18, unknown 152.0
2140 Male, age 76, both hemispheres 96.9
Pretectal area
nTPM: 238.1
2007 Male, age 72, unknown 334.7
1817 Female, age 42, unknown 329.3
1944 Female, age 72, unknown 329.0
1816 Male, age 51, unknown 317.5
1815 Male, age 53, unknown 271.3
2273 Male, age 74, both hemispheres 213.4
2667 Female, age 75, unknown 183.3
2407 Male, age 75, both hemispheres 175.3
2224 Female, age 72, unknown 164.7
2825 Male, age 18, unknown 151.1
2316 Male, age 76, right hemisphere 149.1
Red nucleus
nTPM: 264.3
1821 Female, age 72, unknown 390.6
1954 Female, age 42, unknown 289.7
1865 Male, age 51, unknown 276.9
2785 Male, age 18, unknown 265.4
2725 Female, age 75, unknown 264.4
2823 Male, age 76, right hemisphere 254.4
2227 Male, age 72, unknown 247.9
1904 Male, age 53, unknown 245.5
2769 Male, age 72, unknown 242.5
2503 Female, age 72, unknown 239.0
2588 Male, age 74, left hemisphere 232.4
2584 Male, age 75, left hemisphere 222.7
Substantia nigra
nTPM: 261.3
1941 Male, age 53, unknown 373.6
1889 Female, age 72, unknown 340.2
1916 Female, age 42, unknown 329.4
2241 Male, age 72, unknown 277.7
1851 Male, age 51, unknown 260.4
2409 Female, age 72, unknown 255.1
2590 Female, age 75, unknown 222.0
2583 Male, age 75, right hemisphere 206.9
2699 Male, age 18, unknown 187.4
2665 Male, age 74, both hemispheres 159.7
Superior colliculus
nTPM: 212.4
2668 Female, age 75, unknown 308.4
2087 Female, age 72, unknown 290.4
1895 Male, age 76, right hemisphere 259.5
2261 Male, age 18, unknown 230.3
2587 Male, age 74, left hemisphere 227.2
1913 Female, age 42, unknown 182.4
1839 Male, age 51, unknown 182.1
1796 Male, age 53, unknown 180.7
1995 Male, age 72, unknown 159.6
2664 Male, age 75, both hemispheres 102.9
Ventral tegmental area
nTPM: 222.5
2410 Female, age 72, unknown 319.8
2218 Male, age 76, both hemispheres 271.3
1915 Female, age 42, unknown 234.7
2223 Female, age 72, unknown 190.7
1942 Male, age 51, unknown 177.9
2021 Male, age 53, unknown 140.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 351.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 351.0
Samples: 139

Max nTPM: 1928.3
Min nTPM: 39.2
Std nTPM: 279.6
Median nTPM: 285.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 1928.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 1500.0
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 1188.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 1042.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 1031.3
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 895.3
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 827.5
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 742.1
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 722.6
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 715.2
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 701.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 705.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 705.5
FF:10158-103A5 76 years, female 705.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 586.3
Pig sample Sample description nTPM
Midbrain
nTPM: 431.9
Samples: 4

Max nTPM: 695.4
Min nTPM: 175.4
Sample A Female 175.4
Sample B Female 253.9
Sample C Male 602.9
Sample D Male 695.4
Periaqueductal gray
nTPM: 249.6
Samples: 3

Max nTPM: 294.0
Min nTPM: 203.3
Sample B Female 251.4
Sample C Male 294.0
Sample D Male 203.3
Substantia nigra
nTPM: 319.7
Samples: 4

Max nTPM: 490.3
Min nTPM: 151.8
Sample A Female 490.3
Sample B Female 218.8
Sample C Male 417.8
Sample D Male 151.8
Superior colliculi
nTPM: 586.3
Samples: 4

Max nTPM: 771.9
Min nTPM: 319.4
Sample A Female 755.3
Sample B Female 319.4
Sample C Male 771.9
Sample D Male 498.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 1419.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 1419.1
Samples: 4

Max nTPM: 1488.3
Min nTPM: 1318.3
Sample A Male 1318.3
Sample B Male 1460.4
Sample C Female 1488.3
Sample D Female 1409.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 22.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 22.7
68546368 Antisense, RP_050120_02_D04, Mouse strain C57BL/6J (56 days, male) 25.4
70919203 Antisense, RP_050712_04_D08, Mouse strain C57BL/6J (56 days, male) 20.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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