MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:33.4 nTPM
HPA:33.4 nTPM
GTEx:76.4 nTPM
FANTOM5:41.4 Scaled Tags Per Million
Pig:30.7 nTPM
Mouse:58.2 nTPM
Allen mouse:3.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 33.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 30.4
2019 Male, age 18, unknown 35.2
2411 Female, age 72, unknown 32.3
2586 Male, age 75, left hemisphere 31.3
2666 Male, age 74, left hemisphere 31.1
1827 Male, age 72, unknown 30.7
1870 Female, age 42, unknown 29.5
2219 Male, age 76, both hemispheres 29.1
1833 Male, age 53, unknown 28.8
1830 Male, age 51, unknown 28.0
2828 Female, age 72, unknown 27.8
Dorsal raphe nucleus
nTPM: 30.3
2298 Female, age 72, unknown 33.5
1828 Male, age 53, unknown 32.0
2047 Male, age 72, unknown 29.6
2750 Male, age 76, both hemispheres 28.5
2016 Female, age 72, unknown 27.7
Inferior colliculus
nTPM: 31.2
2097 Female, age 72, unknown 34.2
1890 Male, age 53, unknown 33.0
1848 Female, age 42, unknown 29.5
2849 Male, age 72, unknown 28.1
Median raphe nucleus
nTPM: 30.0
2220 Male, age 76, midline 30.0
Pedunculopontine tegmental nucleus
nTPM: 30.3
1921 Female, age 85, both hemispheres 32.4
2334 Male, age 80, both hemispheres 30.3
2338 Male, age 61, both hemispheres 28.3
Periaquaductal grey, anterior
nTPM: 28.4
1795 Male, age 51, unknown 28.8
1947 Male, age 18, unknown 28.2
2502 Female, age 75, unknown 28.1
Periaquaductal grey, dorsal
nTPM: 29.3
1831 Male, age 72, unknown 31.1
1840 Male, age 53, unknown 29.2
2464 Female, age 72, unknown 28.5
2850 Male, age 76, both hemispheres 28.5
Periaquaductal grey, lateral
nTPM: 28.4
2053 Male, age 18, unknown 29.4
2272 Male, age 74, both hemispheres 29.1
2140 Male, age 76, both hemispheres 26.7
Pretectal area
nTPM: 33.4
1816 Male, age 51, unknown 40.4
1944 Female, age 72, unknown 37.8
1817 Female, age 42, unknown 37.7
2007 Male, age 72, unknown 37.0
1815 Male, age 53, unknown 35.0
2667 Female, age 75, unknown 31.8
2224 Female, age 72, unknown 30.5
2407 Male, age 75, both hemispheres 30.2
2316 Male, age 76, right hemisphere 29.7
2273 Male, age 74, both hemispheres 29.3
2825 Male, age 18, unknown 28.5
Red nucleus
nTPM: 30.4
1821 Female, age 72, unknown 34.0
2785 Male, age 18, unknown 33.1
2725 Female, age 75, unknown 31.0
2503 Female, age 72, unknown 30.8
1904 Male, age 53, unknown 30.4
2769 Male, age 72, unknown 30.1
1954 Female, age 42, unknown 29.9
1865 Male, age 51, unknown 29.6
2227 Male, age 72, unknown 29.6
2588 Male, age 74, left hemisphere 29.5
2823 Male, age 76, right hemisphere 29.5
2584 Male, age 75, left hemisphere 27.7
Substantia nigra
nTPM: 30.9
1889 Female, age 72, unknown 36.2
1916 Female, age 42, unknown 32.8
1851 Male, age 51, unknown 31.5
2241 Male, age 72, unknown 31.5
2583 Male, age 75, right hemisphere 30.4
2590 Female, age 75, unknown 30.3
2665 Male, age 74, both hemispheres 29.9
2409 Female, age 72, unknown 29.4
1941 Male, age 53, unknown 29.3
2699 Male, age 18, unknown 27.2
Superior colliculus
nTPM: 30.7
2087 Female, age 72, unknown 35.1
2668 Female, age 75, unknown 31.8
1895 Male, age 76, right hemisphere 31.4
2261 Male, age 18, unknown 31.1
1796 Male, age 53, unknown 30.6
1913 Female, age 42, unknown 30.2
2587 Male, age 74, left hemisphere 30.2
1995 Male, age 72, unknown 29.2
1839 Male, age 51, unknown 28.8
2664 Male, age 75, both hemispheres 28.3
Ventral tegmental area
nTPM: 30.2
2410 Female, age 72, unknown 33.3
1915 Female, age 42, unknown 31.3
2218 Male, age 76, both hemispheres 30.3
2223 Female, age 72, unknown 29.5
1942 Male, age 51, unknown 28.7
2021 Male, age 53, unknown 28.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 76.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 76.4
Samples: 139

Max nTPM: 120.3
Min nTPM: 44.9
Std nTPM: 14.6
Median nTPM: 74.4
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 120.3
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 115.6
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 111.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 107.6
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 107.6
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 107.0
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 105.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 102.9
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 101.9
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 101.9
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 98.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 41.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 41.4
FF:10158-103A5 76 years, female 41.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 30.7
Pig sample Sample description nTPM
Midbrain
nTPM: 29.1
Samples: 4

Max nTPM: 31.1
Min nTPM: 26.9
Sample A Female 27.8
Sample B Female 26.9
Sample C Male 31.1
Sample D Male 30.6
Periaqueductal gray
nTPM: 25.2
Samples: 3

Max nTPM: 26.1
Min nTPM: 24.0
Sample B Female 26.1
Sample C Male 24.0
Sample D Male 25.4
Substantia nigra
nTPM: 26.1
Samples: 4

Max nTPM: 28.2
Min nTPM: 24.3
Sample A Female 26.0
Sample B Female 24.3
Sample C Male 25.8
Sample D Male 28.2
Superior colliculi
nTPM: 30.7
Samples: 4

Max nTPM: 33.2
Min nTPM: 26.2
Sample A Female 32.2
Sample B Female 26.2
Sample C Male 33.2
Sample D Male 31.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 58.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 58.2
Samples: 4

Max nTPM: 65.1
Min nTPM: 55.3
Sample A Male 57.0
Sample B Male 55.3
Sample C Female 55.4
Sample D Female 65.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.3
79393535 Antisense, RP_071018_02_B02, Mouse strain C57BL/6J (56 days, male) 3.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.