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TISSUE SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN OVARY
PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:164.1 nTPM
HPA:164.1 nTPM
GTEx:100.4 nTPM
FANTOM5:101.6 Scaled Tags Per Million

SMALL INTESTINE - Annotated protein expression
Pending normal tissue analysis

SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Read more
Average nTPM 164.1
overview
Male, age 65
Small intestine sample 232
nTPM: 154.9
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 169.3
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 155.1
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 177.1

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 100.4
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 100.4
Samples: 187

Max nTPM: 143.7
Min nTPM: 63.3
Std nTPM: 15.0
Median nTPM: 98.9
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 143.7
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 142.9
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 139.6
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 137.2
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 137.0
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 134.9
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 133.3
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 132.0
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 131.2
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 128.9
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 127.8
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 126.8
GTEX-YFCO-1326-SM-664NV 40-49 years, male 126.6
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 124.9
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 124.8
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 124.2
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 123.5
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 123.2
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 121.7
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 121.1
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 120.7
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 120.4
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 119.2
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 119.0
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 118.5
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 118.4
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 117.9
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 117.8
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 117.5
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 117.5
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 115.7
GTEX-144GM-1026-SM-79OKU 20-29 years, male 114.7
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 114.1
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 113.1
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 112.8
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 112.8
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 111.8
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 111.7
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 111.7
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 111.4
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 110.9
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 110.7
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 110.2
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 109.5
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 109.3
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 109.3
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 109.1
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 108.4
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 108.4
GTEX-111YS-1426-SM-5GID8 60-69 years, male 107.7
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 107.7
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 107.4
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 107.3
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 106.8
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 106.6
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 106.5
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 106.3
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 106.2
GTEX-117YX-0326-SM-5GICL 50-59 years, male 105.7
GTEX-1122O-1326-SM-5H11F 60-69 years, female 105.4
GTEX-14PN3-2026-SM-68729 60-69 years, female 104.1
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 104.1
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 103.6
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 103.1
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 103.0
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 102.9
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 102.8
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 102.4
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 102.4
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 102.4
GTEX-14PKU-1626-SM-6871C 40-49 years, female 102.1
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 101.9
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 101.8
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 101.3
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 101.3
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 101.2
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 100.9
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 100.8
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 100.8
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 100.8
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 100.8
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 100.8
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 100.8
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 100.8
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 100.6
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 100.3
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 100.3
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 100.1
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 100.1
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 100.0
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 99.3
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 99.3
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 99.2
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 98.9
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 98.9
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 98.6
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 98.6
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 98.1
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 98.0
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 98.0
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 97.7
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 97.5
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 97.4
GTEX-13113-1226-SM-5EGHT 60-69 years, female 97.3
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 97.1
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 96.5
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 96.3
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 96.2
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 96.2
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 96.1
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 95.8
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 95.8
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 95.6
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 95.5
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 95.5
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 95.4
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 95.2
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 94.6
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 93.8
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 93.5
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 93.0
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 92.9
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 92.8
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 92.7
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 92.6
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 92.3
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 92.0
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 91.9
GTEX-13111-1426-SM-5DUW3 50-59 years, male 91.9
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 91.8
GTEX-14PK6-1626-SM-6871I 70-79 years, female 91.3
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 91.3
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 91.2
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 91.0
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 90.5
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 90.2
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 89.9
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 89.8
GTEX-1C475-1426-SM-793CH 40-49 years, female 89.7
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 89.7
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 89.5
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 89.1
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 89.0
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 88.8
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 88.8
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 88.7
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 88.5
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 88.4
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 88.4
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 88.3
GTEX-183FY-1626-SM-793D8 20-29 years, male 88.2
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 88.0
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 87.6
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 86.9
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 86.8
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 86.7
GTEX-13O61-1326-SM-5KM31 60-69 years, male 86.6
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 86.5
GTEX-1192X-2526-SM-59868 50-59 years, male 86.3
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 86.3
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 85.5
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 85.5
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 85.4
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 85.2
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 85.2
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 84.8
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 84.5
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 84.4
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 84.0
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 83.4
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 83.2
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 83.1
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 82.9
GTEX-ZTSS-0926-SM-59865 40-49 years, male 82.5
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 82.1
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 81.9
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 79.0
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 77.5
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 77.5
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 77.5
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 76.6
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 76.0
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 74.8
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 74.6
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 69.7
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 66.1
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 63.3
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 101.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 101.6
FF:10024-101D6 15,40,85 years, mixed 101.6

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