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TISSUE SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN OVARY
PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:219.2 nTPM
HPA:219.2 nTPM
GTEx:230.5 nTPM
FANTOM5:112.0 Scaled Tags Per Million
Pig:51.8 nTPM

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 219.2
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 213.4
1981 Female, age 72, midline 247.8
2048 Male, age 55, midline 232.5
2565 Male, age 75, midline 196.2
2816 Male, age 47, midline 195.7
2194 Female, age 79, both hemispheres 195.0
Cervical spinal cord, dorsal horn
nTPM: 219.2
2173 Female, age 72, unknown 246.4
2296 Male, age 66, both hemispheres 234.7
2069 Male, age 47, both hemispheres 224.9
1877 Male, age 55, unknown 212.6
2721 Male, age 90, both hemispheres 202.6
2297 Male, age 75, both hemispheres 194.1
Cervical spinal cord, ventral horn
nTPM: 215.9
2098 Female, age 72, unknown 262.5
2295 Male, age 66, both hemispheres 223.4
2480 Male, age 75, both hemispheres 219.2
2809 Male, age 90, both hemispheres 212.8
2068 Male, age 55, unknown 194.0
2820 Female, age 79, both hemispheres 183.3

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 230.5
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 230.5
Samples: 159

Max nTPM: 377.7
Min nTPM: 138.5
Std nTPM: 47.1
Median nTPM: 226.5
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 377.7
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 370.6
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 363.6
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 355.9
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 339.5
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 321.5
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 317.5
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 316.6
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 315.4
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 307.7
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 302.7
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 298.6
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 298.2
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 293.4
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 290.2
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 287.7
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 287.6
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 285.6
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 285.3
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 284.8
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 281.6
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 280.5
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 280.2
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 279.8
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 279.7
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 278.1
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 277.1
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 276.6
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 276.5
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 276.0
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 273.9
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 273.0
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 270.8
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 270.3
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 269.1
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 268.7
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 268.2
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 267.5
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 262.2
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 262.0
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 261.2
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 261.1
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 259.7
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 256.0
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 254.7
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 253.0
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 252.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 252.1
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 249.6
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 249.5
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 247.1
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 246.3
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 245.4
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 245.2
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 244.3
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 242.8
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 242.6
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 242.1
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 241.5
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 240.5
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 240.3
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 240.0
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 238.0
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 237.9
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 237.3
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 236.7
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 235.2
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 233.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 233.1
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 233.0
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 232.8
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 232.0
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 231.6
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 231.1
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 229.7
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 229.3
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 229.1
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 228.8
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 228.3
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 226.5
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 225.6
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 224.7
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 222.1
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 222.1
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 221.9
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 221.8
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 220.3
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 218.7
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 218.2
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 216.3
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 216.1
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 214.3
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 211.4
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 211.4
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 211.1
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 210.8
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 209.9
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 209.2
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 208.6
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 208.2
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 207.9
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 207.9
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 207.8
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 207.8
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 206.6
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 206.2
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 206.1
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 205.9
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 205.8
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 205.5
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 205.1
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 204.5
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 204.1
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 204.1
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 203.4
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 201.6
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 198.9
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 197.6
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 197.4
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 196.9
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 194.4
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 194.0
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 192.0
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 192.0
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 191.9
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 191.6
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 190.9
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 189.0
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 187.9
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 187.7
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 183.0
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 182.0
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 181.0
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 180.7
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 179.6
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 177.3
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 176.5
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 176.4
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 175.7
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 174.4
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 174.4
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 174.3
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 173.5
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 173.4
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 173.3
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 171.7
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 171.6
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 171.0
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 170.8
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 169.1
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 168.8
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 168.4
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 162.1
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 161.0
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 156.0
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 152.6
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 150.0
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 142.4
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 138.5
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 112.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 112.0
FF:10159-103A6 76 years, female 119.1
FF:10181-103D1 60 years, female 104.9

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 51.8
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 45.4
Samples: 4

Max nTPM: 49.6
Min nTPM: 38.3
Sample A Female 46.0
Sample B Female 47.5
Sample C Male 38.3
Sample D Male 49.6
Ventral spinal cord
nTPM: 51.8
Samples: 4

Max nTPM: 58.0
Min nTPM: 48.1
Sample A Female 48.1
Sample B Female 51.4
Sample C Male 49.7
Sample D Male 58.0

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