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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:188.6 nTPM
HPA:188.6 nTPM
GTEx:152.4 nTPM
FANTOM5:143.7 Scaled Tags Per Million
Pig:49.6 nTPM
Mouse:148.7 nTPM
Allen mouse:10.4 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 188.6
Sample id Sample description nTPM
Amygdala
nTPM: 188.6
2814 Male, age 76, right hemisphere 198.4
2695 Female, age 67, right hemisphere 193.4
1987 Female, age 91, left hemisphere 185.9
2514 Male, age 75, right hemisphere 185.8
2517 Female, age 94, left hemisphere 179.7
Basal amygdala
nTPM: 179.2
2609 Male, age 75, right hemisphere 187.7
1955 Male, age 76, both hemispheres 184.4
2110 Male, age 80, left hemisphere 180.8
2243 Female, age 91, right hemisphere 179.3
2685 Female, age 94, left hemisphere 172.3
2827 Female, age 67, right hemisphere 170.5
Central amygdala
nTPM: 186.4
1905 Male, age 76, both hemispheres 192.5
2826 Female, age 94, left hemisphere 191.6
2515 Male, age 75, right hemisphere 188.9
2239 Male, age 80, left hemisphere 180.4
2701 Female, age 91, right hemisphere 178.6
Corticomedial amygdala
nTPM: 177.1
2428 Male, age 75, right hemisphere 185.2
2829 Male, age 80, left hemisphere 185.0
2240 Male, age 76, both hemispheres 180.6
2242 Female, age 91, right hemisphere 179.0
2535 Female, age 67, right hemisphere 168.1
2429 Female, age 94, left hemisphere 165.0
Lateral amygdala
nTPM: 180.7
1883 Male, age 76, both hemispheres 193.9
2516 Male, age 75, right hemisphere 187.6
2534 Female, age 94, left hemisphere 183.2
2256 Male, age 80, left hemisphere 174.2
2830 Female, age 67, right hemisphere 173.8
2255 Female, age 91, right hemisphere 171.3
Stria terminalis, bed nucleus
nTPM: 175.8
2201 Male, age 74, unknown 180.5
1974 Female, age 91, both hemispheres 180.2
2486 Female, age 94, both hemispheres 166.7

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 152.4
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 152.4
Samples: 152

Max nTPM: 853.5
Min nTPM: 71.8
Std nTPM: 117.6
Median nTPM: 116.6
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 853.5
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 786.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 579.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 552.8
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 543.5
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 526.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 429.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 399.5
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 379.6
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 367.1
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 352.7
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 291.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 247.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 235.0
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 234.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 225.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 222.8
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 199.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 184.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 183.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 182.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 182.1
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 174.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 162.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 161.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 161.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 160.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 155.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 155.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 155.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 154.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 153.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 152.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 149.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 149.7
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 149.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 147.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 146.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 145.0
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 145.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 144.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 142.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 139.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 138.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 137.2
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 136.5
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 134.8
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 134.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 134.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 134.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 133.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 131.8
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 131.5
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 130.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 129.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 129.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 129.4
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 129.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 127.8
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 127.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 126.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 125.5
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 124.9
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 123.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 123.2
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 122.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 122.4
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 122.3
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 121.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 121.0
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 120.3
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 118.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 118.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 118.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 117.7
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 117.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 116.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 115.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 114.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 114.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 113.4
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 113.2
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 113.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 112.3
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 112.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 111.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 111.7
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 111.5
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 111.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 110.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 110.8
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 110.5
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 110.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 110.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 109.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 108.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 108.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 108.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 108.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 107.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 107.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 106.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 105.8
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 105.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 104.5
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 104.3
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 104.1
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 103.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 103.3
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 102.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 102.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 102.4
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 102.0
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 102.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 101.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 101.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 101.1
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 100.7
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 100.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 98.4
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 98.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 97.9
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 97.4
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 96.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 96.2
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 96.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 96.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 95.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 95.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 94.1
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 92.4
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 92.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 91.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 91.1
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 90.8
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 90.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 90.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 89.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 89.5
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 88.5
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 88.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 88.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 88.1
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 87.6
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 85.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 85.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 84.5
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 84.5
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 81.6
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 79.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 79.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 71.8
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 143.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 143.7
FF:10151-102I7 76 years, female 143.7

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 49.6
Pig sample Sample description nTPM
Amygdala
nTPM: 49.6
Samples: 4

Max nTPM: 59.0
Min nTPM: 41.5
Sample A Female 59.0
Sample B Female 51.0
Sample C Male 41.5
Sample D Male 46.9

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 148.7
Mouse sample Sample description nTPM
Amygdala
nTPM: 148.7
Samples: 4

Max nTPM: 162.2
Min nTPM: 138.2
Sample A Male 162.2
Sample B Male 144.3
Sample C Female 138.2
Sample D Female 149.9

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 10.4
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 10.4
69169385 Antisense, RP_050321_03_D12, Mouse strain C57BL/6J (56 days, male) 10.4

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