MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:198.5 nTPM
HPA:198.5 nTPM
GTEx:169.4 nTPM
FANTOM5:235.3 Scaled Tags Per Million
Pig:64.0 nTPM
Mouse:186.2 nTPM
Allen mouse:8.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 198.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 185.1
2019 Male, age 18, unknown 196.3
1870 Female, age 42, unknown 191.6
1827 Male, age 72, unknown 190.3
2411 Female, age 72, unknown 189.2
2828 Female, age 72, unknown 188.2
1833 Male, age 53, unknown 185.4
2666 Male, age 74, left hemisphere 183.5
1830 Male, age 51, unknown 181.3
2586 Male, age 75, left hemisphere 178.2
2219 Male, age 76, both hemispheres 166.9
Dorsal raphe nucleus
nTPM: 198.5
2298 Female, age 72, unknown 202.7
1828 Male, age 53, unknown 202.5
2047 Male, age 72, unknown 200.8
2750 Male, age 76, both hemispheres 199.1
2016 Female, age 72, unknown 187.5
Inferior colliculus
nTPM: 187.2
2097 Female, age 72, unknown 190.0
1848 Female, age 42, unknown 187.5
1890 Male, age 53, unknown 186.5
2849 Male, age 72, unknown 184.8
Median raphe nucleus
nTPM: 195.5
2220 Male, age 76, midline 195.5
Pedunculopontine tegmental nucleus
nTPM: 194.8
2334 Male, age 80, both hemispheres 204.3
2338 Male, age 61, both hemispheres 190.9
1921 Female, age 85, both hemispheres 189.2
Periaquaductal grey, anterior
nTPM: 189.7
2502 Female, age 75, unknown 193.7
1947 Male, age 18, unknown 188.9
1795 Male, age 51, unknown 186.5
Periaquaductal grey, dorsal
nTPM: 190.4
2850 Male, age 76, both hemispheres 201.3
1840 Male, age 53, unknown 191.7
2464 Female, age 72, unknown 185.0
1831 Male, age 72, unknown 183.7
Periaquaductal grey, lateral
nTPM: 192.0
2140 Male, age 76, both hemispheres 199.8
2272 Male, age 74, both hemispheres 191.8
2053 Male, age 18, unknown 184.4
Pretectal area
nTPM: 194.3
1816 Male, age 51, unknown 203.1
2007 Male, age 72, unknown 200.5
1817 Female, age 42, unknown 199.7
1944 Female, age 72, unknown 198.4
2273 Male, age 74, both hemispheres 197.0
2667 Female, age 75, unknown 196.6
2224 Female, age 72, unknown 193.8
1815 Male, age 53, unknown 192.6
2316 Male, age 76, right hemisphere 188.7
2825 Male, age 18, unknown 188.3
2407 Male, age 75, both hemispheres 178.8
Red nucleus
nTPM: 191.4
1821 Female, age 72, unknown 203.4
2725 Female, age 75, unknown 201.1
2823 Male, age 76, right hemisphere 197.3
1954 Female, age 42, unknown 195.0
2503 Female, age 72, unknown 194.4
2785 Male, age 18, unknown 192.5
1904 Male, age 53, unknown 190.2
1865 Male, age 51, unknown 188.8
2227 Male, age 72, unknown 186.8
2769 Male, age 72, unknown 185.0
2588 Male, age 74, left hemisphere 182.7
2584 Male, age 75, left hemisphere 179.8
Substantia nigra
nTPM: 197.4
2241 Male, age 72, unknown 208.4
1916 Female, age 42, unknown 206.5
1851 Male, age 51, unknown 202.3
1889 Female, age 72, unknown 202.1
1941 Male, age 53, unknown 200.9
2409 Female, age 72, unknown 198.8
2699 Male, age 18, unknown 195.2
2665 Male, age 74, both hemispheres 190.5
2590 Female, age 75, unknown 188.7
2583 Male, age 75, right hemisphere 180.1
Superior colliculus
nTPM: 187.4
1895 Male, age 76, right hemisphere 205.2
2087 Female, age 72, unknown 195.6
2587 Male, age 74, left hemisphere 192.5
2261 Male, age 18, unknown 188.0
1839 Male, age 51, unknown 186.7
1796 Male, age 53, unknown 184.1
1995 Male, age 72, unknown 183.2
1913 Female, age 42, unknown 182.5
2668 Female, age 75, unknown 180.0
2664 Male, age 75, both hemispheres 176.5
Ventral tegmental area
nTPM: 191.5
1915 Female, age 42, unknown 195.9
2410 Female, age 72, unknown 195.6
2218 Male, age 76, both hemispheres 194.3
2223 Female, age 72, unknown 188.5
1942 Male, age 51, unknown 187.7
2021 Male, age 53, unknown 186.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 169.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 169.4
Samples: 139

Max nTPM: 880.1
Min nTPM: 92.1
Std nTPM: 107.4
Median nTPM: 135.4
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 880.1
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 710.6
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 631.6
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 467.3
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 428.8
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 400.5
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 359.6
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 333.0
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 328.4
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 317.2
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 314.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 235.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 235.3
FF:10158-103A5 76 years, female 235.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 64.0
Pig sample Sample description nTPM
Midbrain
nTPM: 64.0
Samples: 4

Max nTPM: 72.4
Min nTPM: 57.2
Sample A Female 72.4
Sample B Female 64.3
Sample C Male 62.2
Sample D Male 57.2
Periaqueductal gray
nTPM: 60.4
Samples: 3

Max nTPM: 62.9
Min nTPM: 57.4
Sample B Female 60.9
Sample C Male 62.9
Sample D Male 57.4
Substantia nigra
nTPM: 63.8
Samples: 4

Max nTPM: 78.3
Min nTPM: 53.7
Sample A Female 78.3
Sample B Female 53.7
Sample C Male 68.1
Sample D Male 55.1
Superior colliculi
nTPM: 63.0
Samples: 4

Max nTPM: 70.5
Min nTPM: 48.2
Sample A Female 70.5
Sample B Female 48.2
Sample C Male 68.7
Sample D Male 64.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 186.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 186.2
Samples: 4

Max nTPM: 199.9
Min nTPM: 166.2
Sample A Male 166.2
Sample B Male 185.8
Sample C Female 199.9
Sample D Female 193.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 8.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.7
69169385 Antisense, RP_050321_03_D12, Mouse strain C57BL/6J (56 days, male) 8.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.