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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN ORAL MUCOSA OVARY
PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE
SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:195.1 nTPM
HPA:195.1 nTPM
GTEx:140.6 nTPM
FANTOM5:210.9 Scaled Tags Per Million
Pig:73.9 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 195.1
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 194.1
1981 Female, age 72, midline 204.0
2048 Male, age 55, midline 200.7
2816 Male, age 47, midline 191.1
2194 Female, age 79, both hemispheres 191.0
2565 Male, age 75, midline 183.9
Cervical spinal cord, dorsal horn
nTPM: 192.1
2173 Female, age 72, unknown 213.1
2296 Male, age 66, both hemispheres 201.9
1877 Male, age 55, unknown 186.9
2069 Male, age 47, both hemispheres 185.7
2721 Male, age 90, both hemispheres 185.2
2297 Male, age 75, both hemispheres 179.8
Cervical spinal cord, ventral horn
nTPM: 195.1
2098 Female, age 72, unknown 205.3
2809 Male, age 90, both hemispheres 203.5
2480 Male, age 75, both hemispheres 197.8
2068 Male, age 55, unknown 190.2
2820 Female, age 79, both hemispheres 187.2
2295 Male, age 66, both hemispheres 186.8

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 140.6
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 140.6
Samples: 159

Max nTPM: 1025.5
Min nTPM: 61.8
Std nTPM: 103.7
Median nTPM: 111.8
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 1025.5
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 576.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 444.2
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 420.3
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 419.9
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 388.6
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 374.7
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 359.0
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 342.2
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 278.8
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 270.5
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 253.9
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 240.5
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 232.6
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 229.7
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 218.5
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 198.0
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 185.5
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 182.2
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 180.9
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 178.4
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 171.6
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 169.9
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 168.7
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 165.2
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 164.0
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 161.0
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 158.4
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 157.6
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 154.9
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 146.6
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 146.0
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 145.3
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 144.7
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 144.3
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 142.3
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 142.3
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 142.3
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 141.2
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 140.2
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 136.6
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 136.4
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 135.6
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 135.6
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 134.6
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 134.1
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 132.8
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 132.7
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 131.8
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 130.9
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 129.8
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 129.7
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 129.0
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 128.8
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 128.6
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 126.2
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 125.7
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 125.2
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 124.4
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 124.2
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 123.6
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 122.1
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 121.9
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 121.6
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 121.5
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 120.7
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 118.7
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 118.7
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 118.6
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 117.9
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 117.5
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 117.1
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 116.0
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 114.2
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 113.6
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 113.0
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 112.8
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 112.3
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 112.1
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 111.8
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 111.5
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 111.1
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 110.1
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 109.8
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 109.1
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 109.0
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 108.6
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 108.5
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 108.4
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 107.4
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 107.0
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 106.9
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 106.8
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 105.9
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 105.8
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 105.8
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 105.7
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 105.0
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 105.0
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 104.9
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 104.6
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 103.5
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 103.3
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 103.0
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 102.1
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 100.8
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 100.0
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 99.8
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 99.2
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 98.5
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 98.5
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 97.3
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 97.2
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 97.2
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 97.1
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 96.4
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 96.0
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 95.8
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 95.7
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 95.5
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 95.3
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 94.6
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 94.0
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 93.8
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 93.6
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 93.5
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 93.5
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 93.3
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 91.3
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 91.1
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 90.8
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 89.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 89.4
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 89.2
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 89.1
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 88.7
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 88.6
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 88.2
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 87.9
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 87.8
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 87.4
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 87.3
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 87.0
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 85.6
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 85.6
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 85.3
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 84.2
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 84.1
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 83.7
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 82.8
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 82.4
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 82.3
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 79.3
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 79.1
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 75.6
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 74.7
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 72.5
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 71.8
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 61.8
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 210.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 210.9
FF:10159-103A6 76 years, female 240.4
FF:10181-103D1 60 years, female 181.3

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 73.9
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 60.7
Samples: 4

Max nTPM: 64.3
Min nTPM: 57.4
Sample A Female 57.4
Sample B Female 64.3
Sample C Male 59.9
Sample D Male 61.0
Ventral spinal cord
nTPM: 73.9
Samples: 4

Max nTPM: 75.3
Min nTPM: 70.0
Sample A Female 75.3
Sample B Female 75.1
Sample C Male 75.3
Sample D Male 70.0

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