BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:47.8 nTPM
HPA:47.8 nTPM
GTEx:29.3 nTPM
FANTOM5:38.1 Scaled Tags Per Million
Pig:30.0 nTPM
Mouse:24.1 nTPM
Allen mouse:0.6 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 47.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 34.3
2481 Female, age 94, left hemisphere 36.5
1857 Female, age 85, left hemisphere 36.3
1854 Male, age 80, left hemisphere 36.0
2290 Female, age 72, unknown 35.3
2846 Female, age 79, unknown 34.5
2289 Male, age 61, right hemisphere 33.0
2288 Male, age 75, left hemisphere 31.8
1781 Male, age 74, unknown 31.3
Claustrum
nTPM: 35.0
2292 Female, age 85, both hemispheres 42.5
2645 Female, age 72, unknown 36.8
1956 Male, age 74, unknown 36.0
2196 Female, age 79, unknown 35.4
2568 Male, age 61, both hemispheres 34.2
2198 Male, age 80, both hemispheres 33.3
2284 Female, age 91, both hemispheres 33.2
2491 Male, age 75, both hemispheres 31.9
2392 Female, age 94, both hemispheres 31.7
Globus pallidus, externus
nTPM: 47.8
2567 Female, age 72, unknown 59.1
2646 Male, age 61, right hemisphere 49.9
1996 Male, age 80, right hemisphere 48.9
2772 Female, age 79, unknown 42.9
2395 Male, age 75, both hemispheres 38.2
Globus pallidus, internus
nTPM: 45.5
2566 Female, age 72, unknown 54.7
2111 Female, age 85, right hemisphere 49.2
1818 Male, age 74, unknown 46.2
2037 Male, age 80, right hemisphere 45.7
2778 Female, age 91, both hemispheres 42.8
2483 Female, age 94, right hemisphere 41.7
2287 Male, age 75, right hemisphere 38.1
Nucleus accumbens
nTPM: 34.5
2732 Male, age 80, right hemisphere 39.5
2698 Female, age 72, unknown 38.2
2391 Female, age 94, left hemisphere 35.3
1806 Female, age 85, left hemisphere 35.0
1783 Male, age 74, unknown 34.1
2824 Male, age 61, right hemisphere 32.0
2286 Male, age 75, left hemisphere 31.8
1856 Female, age 91, right hemisphere 30.1
Nucleus basalis of Meynert
nTPM: 41.3
2569 Male, age 61, both hemispheres 56.1
2821 Male, age 75, both hemispheres 37.3
2393 Male, age 80, right hemisphere 35.9
2484 Female, age 94, left hemisphere 35.9
Nucleus of the diagonal band
nTPM: 31.0
1979 Male, age 74, unknown 34.0
2029 Male, age 61, right hemisphere 32.1
2775 Male, age 80, right hemisphere 30.2
1812 Female, age 91, both hemispheres 30.0
2195 Female, age 85, both hemispheres 28.8
Olfactory tubercle
nTPM: 31.2
1846 Male, age 80, right hemisphere 33.8
2856 Male, age 75, right hemisphere 32.1
2487 Female, age 94, left hemisphere 29.8
1998 Female, age 91, both hemispheres 28.9
Putamen
nTPM: 35.7
2647 Male, age 75, left hemisphere 41.2
2489 Female, age 72, unknown 39.9
2482 Female, age 94, left hemisphere 37.4
1829 Male, age 74, unknown 35.5
1937 Female, age 91, right hemisphere 32.4
2466 Female, age 79, unknown 32.2
1838 Male, age 80, right hemisphere 31.6
Septal nuclei
nTPM: 33.9
2394 Male, age 61, left hemisphere 46.3
2199 Male, age 80, right hemisphere 40.1
2059 Female, age 85, both hemispheres 36.0
1960 Male, age 74, unknown 29.1
2009 Female, age 91, both hemispheres 28.8
2629 Female, age 94, right hemisphere 28.6
2031 Female, age 72, unknown 28.4

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 29.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 26.2
Samples: 246

Max nTPM: 63.3
Min nTPM: 5.4
Std nTPM: 11.2
Median nTPM: 23.6
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 63.3
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 62.8
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 59.0
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 58.4
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 56.5
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 56.1
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 54.9
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 54.3
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 54.1
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 52.7
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 52.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 25.4
Samples: 246

Max nTPM: 106.8
Min nTPM: 9.5
Std nTPM: 12.8
Median nTPM: 21.4
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 106.8
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 64.6
GTEX-1CB4H-0011-R6b-SM-CKZNK 60-69 years, female 61.2
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 59.7
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 59.3
GTEX-1EWIQ-0011-R6a-SM-ARU8G 70-79 years, female 58.1
GTEX-139TS-0011-R6a-SM-5J2OB 60-69 years, male 55.7
GTEX-13PL6-0011-R6a-SM-5O9C5 40-49 years, female 55.7
GTEX-1C64N-0011-R6a-SM-7IGO9 50-59 years, male 54.8
GTEX-X261-0011-R6B-SM-4E3J8 50-59 years, male 54.8
GTEX-1A8G6-0011-R6b-SM-7P8PE 60-69 years, male 54.3
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Brain - Putamen (basal ganglia)
Average nTPM: 29.3
Samples: 205

Max nTPM: 84.2
Min nTPM: 9.0
Std nTPM: 11.3
Median nTPM: 27.9
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 84.2
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 62.8
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 59.0
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 57.4
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 56.9
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 55.4
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 54.3
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 54.1
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 53.8
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 52.6
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 51.9
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 38.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 38.1
FF:10164-103B2 76 years, female 38.1
Globus pallidus
Scaled Tags Per Million: 35.8
FF:10161-103A8 76 years, female 41.7
FF:10175-103C4 60 years, female 29.9
Nucleus accumbens
Scaled Tags Per Million: 30.4
FF:10037-101F1 23-56 years, mixed 30.4
Putamen
Scaled Tags Per Million: 25.5
FF:10176-103C5 60 years, female 25.5

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 30.0
Pig sample Sample description nTPM
Caudate
nTPM: 27.5
Samples: 4

Max nTPM: 33.2
Min nTPM: 20.9
Sample A Female 20.9
Sample B Female 33.2
Sample C Male 31.5
Sample D Male 24.2
Putamen
nTPM: 28.6
Samples: 4

Max nTPM: 32.6
Min nTPM: 24.7
Sample A Female 32.6
Sample B Female 24.7
Sample C Male 28.1
Sample D Male 28.9
Septum
nTPM: 29.8
Samples: 4

Max nTPM: 32.7
Min nTPM: 27.2
Sample A Female 27.2
Sample B Female 30.0
Sample C Male 32.7
Sample D Male 29.3
Ventral pallidum
nTPM: 30.0
Samples: 4

Max nTPM: 39.3
Min nTPM: 22.7
Sample A Female 22.7
Sample B Female 30.2
Sample C Male 39.3
Sample D Male 27.6

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 24.1
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 22.9
Samples: 4

Max nTPM: 26.1
Min nTPM: 19.9
Sample A Male 23.2
Sample B Male 26.1
Sample C Female 19.9
Sample D Female 22.4
Septum
nTPM: 24.2
Samples: 4

Max nTPM: 27.3
Min nTPM: 21.5
Sample A Male 21.5
Sample B Male 27.3
Sample C Female 23.9
Sample D Female 23.9
Ventral forebrain
nTPM: 21.8
Samples: 4

Max nTPM: 28.2
Min nTPM: 18.6
Sample A Male 19.3
Sample B Male 21.0
Sample C Female 28.2
Sample D Female 18.6

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.6
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.6
73584759 Antisense, RP_051206_01_A10, Mouse strain C57BL/6J (56 days, male) 0.6
Pallidum
Expression energy: 0.2
73584759 Antisense, RP_051206_01_A10, Mouse strain C57BL/6J (56 days, male) 0.2

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