MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:14.2 nTPM
HPA:14.2 nTPM
GTEx:32.1 nTPM
FANTOM5:47.3 Scaled Tags Per Million
Pig:41.7 nTPM
Mouse:57.1 nTPM
Allen mouse:5.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 14.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 9.1
2586 Male, age 75, left hemisphere 25.3
2019 Male, age 18, unknown 16.1
2219 Male, age 76, both hemispheres 11.7
2666 Male, age 74, left hemisphere 8.4
2828 Female, age 72, unknown 8.0
2411 Female, age 72, unknown 5.7
1827 Male, age 72, unknown 5.6
1830 Male, age 51, unknown 3.6
1833 Male, age 53, unknown 3.3
1870 Female, age 42, unknown 3.1
Dorsal raphe nucleus
nTPM: 4.3
2047 Male, age 72, unknown 7.9
1828 Male, age 53, unknown 7.0
2750 Male, age 76, both hemispheres 3.4
2298 Female, age 72, unknown 3.0
2016 Female, age 72, unknown 0.3
Inferior colliculus
nTPM: 11.2
2097 Female, age 72, unknown 16.0
1890 Male, age 53, unknown 11.4
1848 Female, age 42, unknown 11.2
2849 Male, age 72, unknown 6.4
Median raphe nucleus
nTPM: 4.2
2220 Male, age 76, midline 4.2
Pedunculopontine tegmental nucleus
nTPM: 7.1
1921 Female, age 85, both hemispheres 13.5
2334 Male, age 80, both hemispheres 6.8
2338 Male, age 61, both hemispheres 0.9
Periaquaductal grey, anterior
nTPM: 12.5
2502 Female, age 75, unknown 17.7
1947 Male, age 18, unknown 10.1
1795 Male, age 51, unknown 9.8
Periaquaductal grey, dorsal
nTPM: 0.6
2464 Female, age 72, unknown 2.6
1831 Male, age 72, unknown 0.0
1840 Male, age 53, unknown 0.0
2850 Male, age 76, both hemispheres 0.0
Periaquaductal grey, lateral
nTPM: 0.4
2140 Male, age 76, both hemispheres 0.7
2272 Male, age 74, both hemispheres 0.5
2053 Male, age 18, unknown 0.0
Pretectal area
nTPM: 7.0
2007 Male, age 72, unknown 20.7
1816 Male, age 51, unknown 14.1
1944 Female, age 72, unknown 11.9
1817 Female, age 42, unknown 11.1
2667 Female, age 75, unknown 6.9
2316 Male, age 76, right hemisphere 3.8
2825 Male, age 18, unknown 3.7
1815 Male, age 53, unknown 2.7
2407 Male, age 75, both hemispheres 1.0
2224 Female, age 72, unknown 0.8
2273 Male, age 74, both hemispheres 0.0
Red nucleus
nTPM: 14.2
2588 Male, age 74, left hemisphere 19.6
2785 Male, age 18, unknown 19.1
2227 Male, age 72, unknown 18.6
2769 Male, age 72, unknown 18.3
2584 Male, age 75, left hemisphere 15.8
2823 Male, age 76, right hemisphere 15.7
1954 Female, age 42, unknown 14.3
1821 Female, age 72, unknown 12.1
2503 Female, age 72, unknown 11.3
1904 Male, age 53, unknown 11.2
1865 Male, age 51, unknown 9.4
2725 Female, age 75, unknown 5.4
Substantia nigra
nTPM: 8.7
1941 Male, age 53, unknown 24.5
1916 Female, age 42, unknown 14.9
1889 Female, age 72, unknown 10.5
2583 Male, age 75, right hemisphere 10.5
2665 Male, age 74, both hemispheres 9.1
1851 Male, age 51, unknown 7.2
2590 Female, age 75, unknown 6.1
2241 Male, age 72, unknown 4.0
2699 Male, age 18, unknown 0.7
2409 Female, age 72, unknown 0.0
Superior colliculus
nTPM: 6.0
2087 Female, age 72, unknown 11.0
2668 Female, age 75, unknown 10.1
2261 Male, age 18, unknown 9.1
2664 Male, age 75, both hemispheres 8.0
1895 Male, age 76, right hemisphere 7.8
1796 Male, age 53, unknown 7.7
1839 Male, age 51, unknown 5.7
2587 Male, age 74, left hemisphere 0.5
1913 Female, age 42, unknown 0.0
1995 Male, age 72, unknown 0.0
Ventral tegmental area
nTPM: 7.9
1942 Male, age 51, unknown 12.4
2410 Female, age 72, unknown 10.4
2218 Male, age 76, both hemispheres 10.2
1915 Female, age 42, unknown 7.4
2223 Female, age 72, unknown 7.0
2021 Male, age 53, unknown 0.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 32.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 32.1
Samples: 139

Max nTPM: 108.3
Min nTPM: 16.0
Std nTPM: 11.4
Median nTPM: 29.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 108.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 67.1
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 66.0
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 61.2
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 58.0
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 51.9
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 51.3
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 47.5
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 47.2
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 46.7
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 46.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 47.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 47.3
FF:10158-103A5 76 years, female 47.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 41.7
Pig sample Sample description nTPM
Midbrain
nTPM: 38.8
Samples: 4

Max nTPM: 61.2
Min nTPM: 26.8
Sample A Female 28.5
Sample B Female 26.8
Sample C Male 61.2
Sample D Male 38.7
Periaqueductal gray
nTPM: 27.1
Samples: 3

Max nTPM: 31.0
Min nTPM: 22.3
Sample B Female 28.1
Sample C Male 31.0
Sample D Male 22.3
Substantia nigra
nTPM: 31.2
Samples: 4

Max nTPM: 39.5
Min nTPM: 20.7
Sample A Female 38.1
Sample B Female 26.4
Sample C Male 39.5
Sample D Male 20.7
Superior colliculi
nTPM: 41.8
Samples: 4

Max nTPM: 55.8
Min nTPM: 30.7
Sample A Female 39.3
Sample B Female 30.7
Sample C Male 55.8
Sample D Male 41.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 57.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 57.2
Samples: 4

Max nTPM: 57.9
Min nTPM: 55.9
Sample A Male 55.9
Sample B Male 57.3
Sample C Female 57.9
Sample D Female 57.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.4
70946251 Antisense, RP_050426_04_G06, Mouse strain C57BL/6J (56 days, male) 6.7
77332673 Antisense, RP_070116_02_B04, Mouse strain C57BL/6J (56 days, male) 4.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.