MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:1168.5 nTPM
HPA:1168.5 nTPM
GTEx:1500.1 nTPM
FANTOM5:29.9 Scaled Tags Per Million
Pig:154.0 nTPM
Mouse:734.6 nTPM
Allen mouse:4.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 1168.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 1144.2
2411 Female, age 72, unknown 1165.6
2666 Male, age 74, left hemisphere 1164.0
1870 Female, age 42, unknown 1154.3
1833 Male, age 53, unknown 1149.6
2828 Female, age 72, unknown 1147.1
2219 Male, age 76, both hemispheres 1144.0
1830 Male, age 51, unknown 1141.1
1827 Male, age 72, unknown 1136.4
2586 Male, age 75, left hemisphere 1129.3
2019 Male, age 18, unknown 1110.6
Dorsal raphe nucleus
nTPM: 1134.8
2750 Male, age 76, both hemispheres 1163.6
2298 Female, age 72, unknown 1144.5
1828 Male, age 53, unknown 1127.7
2016 Female, age 72, unknown 1127.4
2047 Male, age 72, unknown 1111.0
Inferior colliculus
nTPM: 1135.8
2849 Male, age 72, unknown 1151.5
1890 Male, age 53, unknown 1146.7
1848 Female, age 42, unknown 1128.4
2097 Female, age 72, unknown 1116.5
Median raphe nucleus
nTPM: 1137.1
2220 Male, age 76, midline 1137.1
Pedunculopontine tegmental nucleus
nTPM: 1155.6
2338 Male, age 61, both hemispheres 1175.3
2334 Male, age 80, both hemispheres 1174.4
1921 Female, age 85, both hemispheres 1117.0
Periaquaductal grey, anterior
nTPM: 1131.7
2502 Female, age 75, unknown 1152.2
1795 Male, age 51, unknown 1125.8
1947 Male, age 18, unknown 1117.1
Periaquaductal grey, dorsal
nTPM: 1139.1
2850 Male, age 76, both hemispheres 1148.7
1840 Male, age 53, unknown 1144.0
2464 Female, age 72, unknown 1137.1
1831 Male, age 72, unknown 1126.6
Periaquaductal grey, lateral
nTPM: 1129.1
2053 Male, age 18, unknown 1152.0
2140 Male, age 76, both hemispheres 1121.7
2272 Male, age 74, both hemispheres 1113.7
Pretectal area
nTPM: 1127.6
1817 Female, age 42, unknown 1158.3
2316 Male, age 76, right hemisphere 1148.7
1815 Male, age 53, unknown 1148.6
2007 Male, age 72, unknown 1138.2
2825 Male, age 18, unknown 1134.0
2224 Female, age 72, unknown 1132.6
1944 Female, age 72, unknown 1129.4
1816 Male, age 51, unknown 1118.7
2407 Male, age 75, both hemispheres 1101.1
2667 Female, age 75, unknown 1100.1
2273 Male, age 74, both hemispheres 1094.2
Red nucleus
nTPM: 1155.2
2503 Female, age 72, unknown 1194.2
1821 Female, age 72, unknown 1174.0
1865 Male, age 51, unknown 1169.8
2725 Female, age 75, unknown 1163.5
1904 Male, age 53, unknown 1156.8
2588 Male, age 74, left hemisphere 1156.8
2769 Male, age 72, unknown 1153.8
2227 Male, age 72, unknown 1150.1
2584 Male, age 75, left hemisphere 1148.1
2823 Male, age 76, right hemisphere 1136.5
2785 Male, age 18, unknown 1134.8
1954 Female, age 42, unknown 1124.2
Substantia nigra
nTPM: 1168.5
2699 Male, age 18, unknown 1252.6
2409 Female, age 72, unknown 1221.6
1851 Male, age 51, unknown 1215.2
2665 Male, age 74, both hemispheres 1185.0
1916 Female, age 42, unknown 1157.0
2241 Male, age 72, unknown 1148.9
1889 Female, age 72, unknown 1142.1
2590 Female, age 75, unknown 1141.8
1941 Male, age 53, unknown 1119.1
2583 Male, age 75, right hemisphere 1101.6
Superior colliculus
nTPM: 1148.3
1995 Male, age 72, unknown 1186.0
1913 Female, age 42, unknown 1185.4
2587 Male, age 74, left hemisphere 1184.0
2668 Female, age 75, unknown 1170.3
1796 Male, age 53, unknown 1147.8
1839 Male, age 51, unknown 1135.7
1895 Male, age 76, right hemisphere 1131.0
2261 Male, age 18, unknown 1119.6
2087 Female, age 72, unknown 1117.2
2664 Male, age 75, both hemispheres 1106.4
Ventral tegmental area
nTPM: 1167.6
2410 Female, age 72, unknown 1197.2
2223 Female, age 72, unknown 1188.3
1915 Female, age 42, unknown 1174.0
2021 Male, age 53, unknown 1169.2
2218 Male, age 76, both hemispheres 1139.7
1942 Male, age 51, unknown 1137.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 1500.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1500.1
Samples: 139

Max nTPM: 5502.5
Min nTPM: 495.9
Std nTPM: 640.4
Median nTPM: 1380.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 5502.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 3802.3
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 3454.1
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 3344.5
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 2980.7
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 2668.5
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 2505.7
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 2399.5
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 2399.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 2280.8
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 2250.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 29.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 29.9
FF:10158-103A5 76 years, female 29.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 154.0
Pig sample Sample description nTPM
Midbrain
nTPM: 146.9
Samples: 4

Max nTPM: 187.4
Min nTPM: 106.3
Sample A Female 187.4
Sample B Female 157.2
Sample C Male 136.5
Sample D Male 106.3
Periaqueductal gray
nTPM: 117.6
Samples: 3

Max nTPM: 127.9
Min nTPM: 101.9
Sample B Female 127.9
Sample C Male 122.9
Sample D Male 101.9
Substantia nigra
nTPM: 151.2
Samples: 4

Max nTPM: 198.6
Min nTPM: 117.7
Sample A Female 198.6
Sample B Female 151.4
Sample C Male 136.9
Sample D Male 117.7
Superior colliculi
nTPM: 154.0
Samples: 4

Max nTPM: 185.3
Min nTPM: 122.7
Sample A Female 185.3
Sample B Female 158.7
Sample C Male 149.1
Sample D Male 122.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 734.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 734.7
Samples: 4

Max nTPM: 820.0
Min nTPM: 662.3
Sample A Male 820.0
Sample B Male 712.1
Sample C Female 662.3
Sample D Female 744.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.3
75934920 Antisense, RP_060530_01_E12, Mouse strain C57BL/6J (56 days, male) 7.1
69012729 Antisense, RP_050309_01_D03, Mouse strain C57BL/6J (56 days, male) 1.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.