BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:18.5 nTPM
HPA:18.5 nTPM
GTEx:21.9 nTPM
FANTOM5:71.7 Scaled Tags Per Million
Pig:44.5 nTPM
Mouse:30.3 nTPM
Allen mouse:0.0 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA036256
Glial cells Low
Neuronal cells Not detected



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 18.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 17.5
2846 Female, age 79, unknown 21.2
1857 Female, age 85, left hemisphere 18.9
1854 Male, age 80, left hemisphere 18.2
2481 Female, age 94, left hemisphere 18.1
2290 Female, age 72, unknown 17.1
1781 Male, age 74, unknown 16.9
2288 Male, age 75, left hemisphere 15.5
2289 Male, age 61, right hemisphere 14.3
Claustrum
nTPM: 14.0
2196 Female, age 79, unknown 16.9
2392 Female, age 94, both hemispheres 15.4
1956 Male, age 74, unknown 15.1
2198 Male, age 80, both hemispheres 14.5
2284 Female, age 91, both hemispheres 14.1
2491 Male, age 75, both hemispheres 13.8
2568 Male, age 61, both hemispheres 13.8
2292 Female, age 85, both hemispheres 11.8
2645 Female, age 72, unknown 10.3
Globus pallidus, externus
nTPM: 14.1
2395 Male, age 75, both hemispheres 17.8
2772 Female, age 79, unknown 17.0
1996 Male, age 80, right hemisphere 15.7
2567 Female, age 72, unknown 10.5
2646 Male, age 61, right hemisphere 9.6
Globus pallidus, internus
nTPM: 15.6
2287 Male, age 75, right hemisphere 19.7
2778 Female, age 91, both hemispheres 17.5
2483 Female, age 94, right hemisphere 15.8
2037 Male, age 80, right hemisphere 15.3
2111 Female, age 85, right hemisphere 14.3
1818 Male, age 74, unknown 14.2
2566 Female, age 72, unknown 12.8
Nucleus accumbens
nTPM: 18.5
1856 Female, age 91, right hemisphere 20.7
2391 Female, age 94, left hemisphere 20.7
2286 Male, age 75, left hemisphere 19.6
2698 Female, age 72, unknown 19.5
2824 Male, age 61, right hemisphere 18.6
1806 Female, age 85, left hemisphere 17.5
1783 Male, age 74, unknown 17.3
2732 Male, age 80, right hemisphere 14.0
Nucleus basalis of Meynert
nTPM: 15.8
2393 Male, age 80, right hemisphere 19.8
2821 Male, age 75, both hemispheres 17.8
2484 Female, age 94, left hemisphere 15.9
2569 Male, age 61, both hemispheres 9.8
Nucleus of the diagonal band
nTPM: 16.1
1812 Female, age 91, both hemispheres 18.4
2029 Male, age 61, right hemisphere 16.0
2195 Female, age 85, both hemispheres 15.6
2775 Male, age 80, right hemisphere 15.6
1979 Male, age 74, unknown 15.0
Olfactory tubercle
nTPM: 15.4
1998 Female, age 91, both hemispheres 17.5
1846 Male, age 80, right hemisphere 16.8
2856 Male, age 75, right hemisphere 14.4
2487 Female, age 94, left hemisphere 12.8
Putamen
nTPM: 18.4
2466 Female, age 79, unknown 22.5
1838 Male, age 80, right hemisphere 22.4
1829 Male, age 74, unknown 21.3
2482 Female, age 94, left hemisphere 19.2
1937 Female, age 91, right hemisphere 18.3
2489 Female, age 72, unknown 13.4
2647 Male, age 75, left hemisphere 11.6
Septal nuclei
nTPM: 14.8
2629 Female, age 94, right hemisphere 16.2
1960 Male, age 74, unknown 16.0
2031 Female, age 72, unknown 16.0
2009 Female, age 91, both hemispheres 15.7
2199 Male, age 80, right hemisphere 14.6
2394 Male, age 61, left hemisphere 13.1
2059 Female, age 85, both hemispheres 12.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 21.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 21.9
Samples: 246

Max nTPM: 54.5
Min nTPM: 7.1
Std nTPM: 7.1
Median nTPM: 21.3
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 54.5
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 46.2
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 41.5
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 40.3
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 39.7
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 39.2
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 38.1
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 37.3
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 36.6
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 35.5
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 35.1
Show allShow less
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 21.5
Samples: 246

Max nTPM: 46.6
Min nTPM: 6.0
Std nTPM: 7.1
Median nTPM: 21.5
GTEX-TSE9-0011-R6A-SM-3DB7L 60-69 years, female 46.6
GTEX-1A3MX-0011-R6a-SM-7P8S9 60-69 years, male 42.8
GTEX-QMR6-0011-R6A-SM-32PKP 50-59 years, male 42.4
GTEX-1I1GR-0011-R6a-SM-CMKHI 60-69 years, male 38.2
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 38.1
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 37.9
GTEX-T2IS-0011-R6A-SM-32QP2 20-29 years, female 35.6
GTEX-T6MN-0011-R6A-SM-32QP8 50-59 years, male 35.5
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 35.0
GTEX-13FLW-0011-R6b-SM-5L3EN 50-59 years, male 34.3
GTEX-1MJK2-0011-R6a-SM-EXUS3 50-59 years, male 32.8
Show allShow less
Brain - Putamen (basal ganglia)
Average nTPM: 20.7
Samples: 205

Max nTPM: 42.8
Min nTPM: 8.4
Std nTPM: 6.3
Median nTPM: 19.5
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 42.8
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 40.8
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 34.5
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 34.5
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 34.2
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 33.0
GTEX-N7MT-0011-R7a-SM-2I3FZ 60-69 years, female 32.9
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 32.7
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 32.3
GTEX-ZAB4-0011-R7a-SM-4SOKE 40-49 years, male 32.1
GTEX-11ONC-0011-R7b-SM-DO93J 60-69 years, male 32.1
Show allShow less

BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 71.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 47.7
FF:10164-103B2 76 years, female 47.7
Globus pallidus
Scaled Tags Per Million: 44.1
FF:10161-103A8 76 years, female 51.1
FF:10175-103C4 60 years, female 37.1
Nucleus accumbens
Scaled Tags Per Million: 57.6
FF:10037-101F1 23-56 years, mixed 57.6
Putamen
Scaled Tags Per Million: 71.7
FF:10176-103C5 60 years, female 71.7

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 44.5
Pig sample Sample description nTPM
Caudate
nTPM: 36.5
Samples: 4

Max nTPM: 39.1
Min nTPM: 33.1
Sample A Female 39.1
Sample B Female 33.1
Sample C Male 39.0
Sample D Male 34.6
Putamen
nTPM: 44.6
Samples: 4

Max nTPM: 53.0
Min nTPM: 37.4
Sample A Female 43.7
Sample B Female 37.4
Sample C Male 53.0
Sample D Male 44.1
Septum
nTPM: 37.9
Samples: 4

Max nTPM: 39.8
Min nTPM: 35.6
Sample A Female 39.8
Sample B Female 35.6
Sample C Male 37.0
Sample D Male 39.3
Ventral pallidum
nTPM: 38.1
Samples: 4

Max nTPM: 41.4
Min nTPM: 35.8
Sample A Female 35.8
Sample B Female 41.4
Sample C Male 36.9
Sample D Male 38.4

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 30.3
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 30.4
Samples: 4

Max nTPM: 34.9
Min nTPM: 26.5
Sample A Male 34.9
Sample B Male 26.5
Sample C Female 29.0
Sample D Female 31.0
Septum
nTPM: 28.8
Samples: 4

Max nTPM: 31.0
Min nTPM: 27.1
Sample A Male 27.3
Sample B Male 31.0
Sample C Female 29.6
Sample D Female 27.1
Ventral forebrain
nTPM: 25.2
Samples: 4

Max nTPM: 27.6
Min nTPM: 23.7
Sample A Male 23.8
Sample B Male 27.6
Sample C Female 23.7
Sample D Female 25.6

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.0
73497535 Antisense, RP_051121_01_C05, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.0
73497535 Antisense, RP_051121_01_C05, Mouse strain C57BL/6J (56 days, male) 0.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.