MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:15.3 nTPM
HPA:15.3 nTPM
GTEx:19.7 nTPM
FANTOM5:52.7 Scaled Tags Per Million
Pig:44.3 nTPM
Mouse:30.4 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 15.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 12.8
2411 Female, age 72, unknown 14.2
2019 Male, age 18, unknown 14.0
2219 Male, age 76, both hemispheres 13.9
1870 Female, age 42, unknown 13.8
1830 Male, age 51, unknown 13.7
1833 Male, age 53, unknown 13.2
1827 Male, age 72, unknown 13.0
2666 Male, age 74, left hemisphere 12.2
2828 Female, age 72, unknown 11.5
2586 Male, age 75, left hemisphere 8.8
Dorsal raphe nucleus
nTPM: 13.7
2750 Male, age 76, both hemispheres 15.0
1828 Male, age 53, unknown 14.0
2298 Female, age 72, unknown 13.5
2047 Male, age 72, unknown 13.2
2016 Female, age 72, unknown 12.8
Inferior colliculus
nTPM: 15.3
2097 Female, age 72, unknown 15.7
1848 Female, age 42, unknown 15.6
1890 Male, age 53, unknown 15.6
2849 Male, age 72, unknown 14.3
Median raphe nucleus
nTPM: 14.3
2220 Male, age 76, midline 14.3
Pedunculopontine tegmental nucleus
nTPM: 15.3
2338 Male, age 61, both hemispheres 16.1
1921 Female, age 85, both hemispheres 15.6
2334 Male, age 80, both hemispheres 14.4
Periaquaductal grey, anterior
nTPM: 14.4
1947 Male, age 18, unknown 15.7
2502 Female, age 75, unknown 15.1
1795 Male, age 51, unknown 12.6
Periaquaductal grey, dorsal
nTPM: 13.3
2850 Male, age 76, both hemispheres 14.5
1831 Male, age 72, unknown 13.3
1840 Male, age 53, unknown 12.7
2464 Female, age 72, unknown 12.7
Periaquaductal grey, lateral
nTPM: 13.9
2272 Male, age 74, both hemispheres 15.5
2053 Male, age 18, unknown 13.4
2140 Male, age 76, both hemispheres 12.9
Pretectal area
nTPM: 14.7
1816 Male, age 51, unknown 16.0
2316 Male, age 76, right hemisphere 15.6
2273 Male, age 74, both hemispheres 15.4
2007 Male, age 72, unknown 15.2
2667 Female, age 75, unknown 15.0
1815 Male, age 53, unknown 14.7
1817 Female, age 42, unknown 14.6
1944 Female, age 72, unknown 14.3
2224 Female, age 72, unknown 13.9
2825 Male, age 18, unknown 13.8
2407 Male, age 75, both hemispheres 13.1
Red nucleus
nTPM: 14.5
1821 Female, age 72, unknown 18.8
2503 Female, age 72, unknown 15.3
1865 Male, age 51, unknown 15.2
2725 Female, age 75, unknown 15.1
1954 Female, age 42, unknown 15.0
1904 Male, age 53, unknown 14.4
2785 Male, age 18, unknown 14.4
2227 Male, age 72, unknown 14.2
2769 Male, age 72, unknown 14.0
2823 Male, age 76, right hemisphere 13.7
2588 Male, age 74, left hemisphere 12.4
2584 Male, age 75, left hemisphere 11.8
Substantia nigra
nTPM: 13.6
2241 Male, age 72, unknown 15.2
1889 Female, age 72, unknown 15.1
2409 Female, age 72, unknown 14.7
1916 Female, age 42, unknown 14.4
1851 Male, age 51, unknown 13.6
1941 Male, age 53, unknown 13.0
2583 Male, age 75, right hemisphere 13.0
2590 Female, age 75, unknown 12.9
2665 Male, age 74, both hemispheres 12.6
2699 Male, age 18, unknown 11.8
Superior colliculus
nTPM: 13.9
2587 Male, age 74, left hemisphere 16.3
1895 Male, age 76, right hemisphere 15.3
2261 Male, age 18, unknown 14.6
1839 Male, age 51, unknown 14.4
1796 Male, age 53, unknown 14.2
2087 Female, age 72, unknown 13.5
1995 Male, age 72, unknown 13.4
1913 Female, age 42, unknown 13.3
2668 Female, age 75, unknown 13.1
2664 Male, age 75, both hemispheres 10.7
Ventral tegmental area
nTPM: 13.4
2410 Female, age 72, unknown 14.5
2218 Male, age 76, both hemispheres 14.4
2223 Female, age 72, unknown 13.9
2021 Male, age 53, unknown 13.1
1915 Female, age 42, unknown 12.8
1942 Male, age 51, unknown 11.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 19.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 19.7
Samples: 139

Max nTPM: 39.8
Min nTPM: 7.5
Std nTPM: 5.4
Median nTPM: 19.4
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 39.8
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 38.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 34.7
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 31.5
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 30.8
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 30.4
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 29.7
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 29.2
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 28.8
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 26.7
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 26.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 52.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 52.7
FF:10158-103A5 76 years, female 52.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 44.3
Pig sample Sample description nTPM
Midbrain
nTPM: 44.3
Samples: 4

Max nTPM: 52.8
Min nTPM: 40.6
Sample A Female 52.8
Sample B Female 41.5
Sample C Male 42.4
Sample D Male 40.6
Periaqueductal gray
nTPM: 37.1
Samples: 3

Max nTPM: 37.9
Min nTPM: 36.4
Sample B Female 36.4
Sample C Male 37.9
Sample D Male 37.1
Substantia nigra
nTPM: 41.8
Samples: 4

Max nTPM: 46.6
Min nTPM: 36.7
Sample A Female 46.6
Sample B Female 36.7
Sample C Male 42.4
Sample D Male 41.6
Superior colliculi
nTPM: 43.8
Samples: 4

Max nTPM: 48.3
Min nTPM: 35.9
Sample A Female 44.9
Sample B Female 35.9
Sample C Male 48.3
Sample D Male 45.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 30.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 30.5
Samples: 4

Max nTPM: 32.2
Min nTPM: 28.1
Sample A Male 32.0
Sample B Male 32.2
Sample C Female 28.1
Sample D Female 29.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
73497535 Antisense, RP_051121_01_C05, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.