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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:226.1 nTPM
HPA:226.1 nTPM
GTEx:293.9 nTPM
FANTOM5:494.3 Scaled Tags Per Million
Pig:55.3 nTPM

AMYGDALA - HPA Brain RNA-seq
Max nTPM 226.1
Sample id Sample description nTPM
Amygdala
nTPM: 225.8
2514 Male, age 75, right hemisphere 250.1
2814 Male, age 76, right hemisphere 234.2
2695 Female, age 67, right hemisphere 229.3
2517 Female, age 94, left hemisphere 207.9
1987 Female, age 91, left hemisphere 207.7
Basal amygdala
nTPM: 208.9
2609 Male, age 75, right hemisphere 257.9
1955 Male, age 76, both hemispheres 220.8
2685 Female, age 94, left hemisphere 202.1
2110 Male, age 80, left hemisphere 201.8
2243 Female, age 91, right hemisphere 195.1
2827 Female, age 67, right hemisphere 175.8
Central amygdala
nTPM: 226.1
2515 Male, age 75, right hemisphere 248.3
1905 Male, age 76, both hemispheres 223.7
2701 Female, age 91, right hemisphere 223.1
2239 Male, age 80, left hemisphere 221.8
2826 Female, age 94, left hemisphere 213.8
Corticomedial amygdala
nTPM: 210.9
2428 Male, age 75, right hemisphere 252.8
2829 Male, age 80, left hemisphere 219.8
2429 Female, age 94, left hemisphere 210.8
2242 Female, age 91, right hemisphere 209.1
2240 Male, age 76, both hemispheres 201.8
2535 Female, age 67, right hemisphere 171.1
Lateral amygdala
nTPM: 213.6
2516 Male, age 75, right hemisphere 249.1
1883 Male, age 76, both hemispheres 233.7
2256 Male, age 80, left hemisphere 213.7
2534 Female, age 94, left hemisphere 207.6
2255 Female, age 91, right hemisphere 203.0
2830 Female, age 67, right hemisphere 174.7
Stria terminalis, bed nucleus
nTPM: 197.1
2201 Male, age 74, unknown 218.5
1974 Female, age 91, both hemispheres 188.9
2486 Female, age 94, both hemispheres 184.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 293.9
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 293.9
Samples: 152

Max nTPM: 510.7
Min nTPM: 11.4
Std nTPM: 66.0
Median nTPM: 290.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 510.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 449.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 431.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 428.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 416.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 411.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 397.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 395.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 388.4
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 386.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 384.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 378.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 378.6
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 374.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 369.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 366.8
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 364.7
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 364.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 363.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 362.6
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 359.6
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 357.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 355.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 354.6
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 354.3
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 354.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 353.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 351.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 349.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 348.5
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 347.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 346.4
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 345.0
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 344.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 343.6
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 342.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 341.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 337.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 336.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 336.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 335.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 335.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 334.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 332.4
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 329.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 327.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 327.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 326.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 322.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 322.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 322.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 320.6
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 319.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 319.1
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 318.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 317.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 314.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 313.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 313.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 312.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 312.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 312.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 312.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 309.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 308.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 308.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 307.2
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 307.1
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 306.8
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 304.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 299.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 297.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 296.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 295.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 295.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 291.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 289.0
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 288.5
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 287.8
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 286.9
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 286.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 285.2
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 280.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 280.7
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 279.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 275.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 275.6
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 274.7
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 274.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 274.1
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 272.8
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 272.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 271.7
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 271.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 271.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 271.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 271.0
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 270.6
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 269.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 267.8
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 267.1
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 266.8
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 266.3
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 265.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 265.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 262.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 261.5
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 261.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 260.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 259.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 259.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 257.1
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 256.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 255.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 254.3
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 251.7
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 251.5
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 251.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 250.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 249.9
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 249.2
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 248.1
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 247.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 245.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 245.3
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 243.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 243.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 242.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 241.4
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 241.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 240.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 237.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 228.6
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 227.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 225.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 222.6
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 221.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 220.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 217.5
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 216.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 216.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 215.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 200.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 194.1
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 174.9
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 171.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 169.0
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 155.9
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 145.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 144.6
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 134.8
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 11.4
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 494.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 494.3
FF:10151-102I7 76 years, female 494.3

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 55.3
Pig sample Sample description nTPM
Amygdala
nTPM: 55.3
Samples: 4

Max nTPM: 66.8
Min nTPM: 48.7
Sample A Female 66.8
Sample B Female 54.3
Sample C Male 48.7
Sample D Male 51.5

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