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BRAIN PONS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Pons
PONS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
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Consensus:291.0 nTPM
HPA:291.0 nTPM
FANTOM5:551.8 Scaled Tags Per Million
Pig:98.3 nTPM

PONS - HPA Brain RNA-seq
Max nTPM 291.0
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 226.2
2301 Female, age 85, both hemispheres 249.3
1984 Male, age 76, both hemispheres 222.9
2090 Male, age 80, both hemispheres 222.5
2188 Female, age 91, both hemispheres 210.1
Dorsal cochlear nucleus
nTPM: 260.1
2802 Male, age 74, right hemisphere 293.3
2058 Male, age 76, both hemispheres 275.5
2370 Male, age 61, both hemispheres 254.7
2378 Male, age 80, both hemispheres 250.8
2187 Female, age 91, both hemispheres 226.2
Dorsal tegmental nucleus
nTPM: 231.4
2083 Male, age 80, both hemispheres 263.4
2326 Male, age 74, both hemispheres 253.4
1936 Male, age 76, left hemisphere 239.8
2358 Male, age 61, both hemispheres 169.0
Dorsolateral tegmental area
nTPM: 236.8
2751 Female, age 85, both hemispheres 264.3
2654 Male, age 80, both hemispheres 259.2
2141 Male, age 76, both hemispheres 231.7
2360 Male, age 74, both hemispheres 218.7
2337 Male, age 61, both hemispheres 210.3
Kolliker-Fuse nucleus
nTPM: 248.9
2315 Male, age 76, right hemisphere 308.8
2163 Male, age 80, both hemispheres 230.4
2793 Female, age 91, left hemisphere 207.6
Lateral lemniscal nuclei
nTPM: 210.3
2169 Male, age 76, both hemispheres 223.8
2453 Male, age 74, right hemisphere 212.0
2320 Female, age 91, left hemisphere 209.4
2036 Male, age 80, both hemispheres 208.3
2746 Female, age 85, left hemisphere 198.2
Lateral parabrachial nucleus
nTPM: 238.7
2792 Male, age 76, both hemispheres 272.8
2790 Male, age 61, both hemispheres 234.4
2139 Female, age 85, right hemisphere 226.3
2013 Male, age 80, both hemispheres 221.3
Lateral vestibular nucleus
nTPM: 236.9
2311 Male, age 80, both hemispheres 241.2
2184 Male, age 76, both hemispheres 232.5
Locus coeruleus
nTPM: 218.6
2317 Female, age 72, unknown 239.0
2014 Male, age 55, unknown 225.9
2788 Male, age 74, unknown 223.6
1980 Male, age 76, both hemispheres 218.6
2162 Male, age 80, both hemispheres 217.0
2123 Female, age 91, both hemispheres 208.9
2720 Male, age 74, both hemispheres 197.1
Medial olivary nucleus
nTPM: 291.0
2138 Female, age 91, both hemispheres 379.6
1962 Male, age 76, both hemispheres 295.6
2851 Male, age 80, both hemispheres 253.2
1943 Male, age 61, both hemispheres 235.8
Medial parabrachial nucleus
nTPM: 232.6
2463 Female, age 85, right hemisphere 241.3
2786 Male, age 76, both hemispheres 236.2
2170 Female, age 91, both hemispheres 232.8
2156 Male, age 61, both hemispheres 229.2
2854 Male, age 80, both hemispheres 223.4
Medial periolivary nuclei
nTPM: 215.7
2791 Male, age 74, right hemisphere 244.4
2063 Male, age 76, both hemispheres 228.7
2458 Female, age 91, both hemispheres 207.8
2171 Female, age 85, both hemispheres 201.2
2081 Male, age 80, both hemispheres 196.5
Motor facial nucleus
nTPM: 231.8
2795 Female, age 91, both hemispheres 304.5
2062 Male, age 76, both hemispheres 240.3
2365 Male, age 74, right hemisphere 232.1
2126 Male, age 61, both hemispheres 216.2
2697 Female, age 85, both hemispheres 200.5
2327 Male, age 80, both hemispheres 196.8
Motor trigeminal nucleus
nTPM: 207.9
2309 Male, age 76, both hemispheres 223.2
2335 Male, age 61, both hemispheres 219.8
2560 Male, age 74, both hemispheres 209.5
2321 Female, age 91, both hemispheres 200.1
2079 Male, age 80, both hemispheres 186.9
Nuclei of the trapezoid body
nTPM: 222.6
2368 Female, age 91, both hemispheres 256.7
1983 Male, age 76, both hemispheres 238.5
2735 Female, age 85, both hemispheres 210.6
2166 Male, age 80, both hemispheres 210.0
2159 Male, age 61, both hemispheres 197.2
Paramedian reticular nucleus
nTPM: 235.5
2057 Male, age 80, both hemispheres 254.6
2052 Male, age 76, both hemispheres 246.9
2313 Male, age 61, both hemispheres 233.5
2050 Female, age 85, both hemispheres 207.1
Pontine nuclei
nTPM: 207.0
1863 Male, age 55, unknown 236.9
2109 Female, age 72, unknown 226.4
2454 Male, age 74, left hemisphere 226.0
1968 Male, age 76, left hemisphere 218.1
2319 Female, age 91, both hemispheres 214.5
2115 Male, age 80, left hemisphere 181.4
2787 Female, age 85, both hemispheres 179.5
2727 Male, age 61, right hemisphere 173.1
Pontine raphe nucleus
nTPM: 229.3
2853 Male, age 76, midline 252.2
2122 Female, age 85, midline 206.4
Posteroventral cochlear nucleus
nTPM: 247.4
2371 Male, age 61, both hemispheres 297.1
2070 Male, age 76, both hemispheres 263.2
2752 Female, age 85, both hemispheres 228.7
2341 Male, age 80, both hemispheres 227.7
2135 Female, age 91, both hemispheres 220.3
Principal sensory trigeminal nucleus
nTPM: 207.8
2324 Male, age 76, both hemispheres 262.3
2008 Male, age 80, left hemisphere 193.4
2367 Female, age 91, left hemisphere 190.0
2158 Male, age 61, both hemispheres 185.4
Reticular pontine nucleus, caudal
nTPM: 218.3
2092 Male, age 76, both hemispheres 238.9
2457 Female, age 91, both hemispheres 226.9
2559 Male, age 74, both hemispheres 213.7
2332 Male, age 80, right hemisphere 193.5
Reticular pontine nucleus, oral
nTPM: 228.1
1939 Male, age 80, both hemispheres 265.5
2167 Male, age 76, both hemispheres 242.1
2366 Female, age 91, both hemispheres 223.5
2012 Female, age 85, both hemispheres 217.1
2361 Male, age 74, both hemispheres 192.4
Reticulotegmental nucleus
nTPM: 236.3
2322 Female, age 91, both hemispheres 255.8
2333 Male, age 80, both hemispheres 251.7
2452 Male, age 74, both hemispheres 221.2
2325 Male, age 76, both hemispheres 216.7
Spinal trigeminal nucleus, oral
nTPM: 229.4
1978 Male, age 76, both hemispheres 247.6
2737 Female, age 85, both hemispheres 224.5
2164 Male, age 80, both hemispheres 216.2
Subcoeruleus area
nTPM: 235.5
2369 Female, age 85, left hemisphere 264.3
2323 Female, age 91, left hemisphere 241.9
1958 Male, age 80, both hemispheres 228.5
2451 Male, age 74, both hemispheres 226.9
2089 Male, age 76, left hemisphere 216.1
Superior olive
nTPM: 213.8
2364 Male, age 74, right hemisphere 231.9
2020 Male, age 76, both hemispheres 225.5
2329 Male, age 80, right hemisphere 211.2
2561 Female, age 91, both hemispheres 206.0
1875 Female, age 85, both hemispheres 194.4
Superior vestibular nucleus
nTPM: 253.8
2061 Male, age 76, both hemispheres 279.4
2015 Male, age 80, both hemispheres 241.1
2383 Male, age 74, both hemispheres 240.9
Ventral periolivary nuclei
nTPM: 215.7
2130 Female, age 85, both hemispheres 227.0
2165 Male, age 80, both hemispheres 226.5
2023 Male, age 76, both hemispheres 226.4
2794 Female, age 91, left hemisphere 182.8
Ventrolateral tegmental area, A5 NE cell group
nTPM: 225.9
2359 Male, age 61, both hemispheres 244.5
2456 Female, age 91, both hemispheres 239.7
1959 Male, age 76, both hemispheres 223.7
2840 Female, age 85, both hemispheres 219.0
2161 Male, age 80, both hemispheres 215.3
2449 Male, age 74, both hemispheres 213.5

PONS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 551.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 551.8
FF:10182-103D2 60 years, female 556.4
FF:10165-103B3 76 years, female 547.3
Pons
Scaled Tags Per Million: 522.9
FF:10033-101E6 18-54 years, mixed 522.9

PONS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
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Average nTPM 98.3
Pig sample Sample description nTPM
Pons
nTPM: 98.3
Samples: 4

Max nTPM: 109.8
Min nTPM: 77.2
Sample A Female 103.8
Sample B Female 77.2
Sample C Male 102.4
Sample D Male 109.8

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