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SCD5
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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
GTEx:220.8 nTPM
FANTOM5:397.2 Scaled Tags Per Million
Pig:55.5 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA042380
Glial cells Not detected
Neuronal cells Not detected



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 220.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 220.8
Samples: 246

Max nTPM: 403.5
Min nTPM: 108.5
Std nTPM: 48.9
Median nTPM: 212.8
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 403.5
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 377.7
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 367.4
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 356.4
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 343.8
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 341.2
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 339.9
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 335.4
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 331.4
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 325.4
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 320.4
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 319.2
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 314.4
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 314.2
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 312.8
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 308.2
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 302.8
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 300.5
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 296.2
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 293.4
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 291.5
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 289.8
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 289.8
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 285.2
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 285.2
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 284.0
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 281.5
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 278.7
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 278.2
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 277.9
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 277.8
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 277.6
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 273.0
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 271.1
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 271.0
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 270.3
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 268.4
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 264.6
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 264.1
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 262.9
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 262.7
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 260.9
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 260.5
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 259.7
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 257.9
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 257.8
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 257.1
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 256.4
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 256.3
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 255.1
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 255.0
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 254.3
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 253.7
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 253.6
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 251.7
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 251.3
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 251.3
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 249.0
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 248.0
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 247.9
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 247.7
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 246.5
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 246.2
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 245.7
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 244.5
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 244.4
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 243.7
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 243.6
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 243.2
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 243.1
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 242.7
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 240.8
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 240.1
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 239.0
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 239.0
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 237.5
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 237.4
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 236.9
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 236.3
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 235.3
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 235.1
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 234.8
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 234.7
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 233.9
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 233.6
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 233.6
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 232.7
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 232.6
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 232.1
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 232.1
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 230.5
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 230.4
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 230.3
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 229.8
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 228.6
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 228.3
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 228.2
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 227.3
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 226.8
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 225.6
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 224.7
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 224.6
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 224.6
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 224.2
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 223.9
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 223.5
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 223.4
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 223.2
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 223.1
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 223.0
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 220.9
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 219.9
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 218.7
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 218.4
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 218.4
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 217.7
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 217.5
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 216.8
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 216.5
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 215.7
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 214.5
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 213.7
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 213.0
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 212.5
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 212.4
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 212.2
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 212.0
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 210.9
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 210.7
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 210.3
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 209.6
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 209.4
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 209.2
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 209.2
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 208.6
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 208.4
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 208.1
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 207.9
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 207.5
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 207.3
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 207.1
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 207.0
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 207.0
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 206.7
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 206.7
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 206.5
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 205.6
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 205.6
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 205.2
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 204.3
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 204.0
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 203.4
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 203.3
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 202.5
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 201.9
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 201.4
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 201.4
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 201.2
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 201.0
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 198.7
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 198.5
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 198.4
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 198.0
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 197.9
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 197.7
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 197.4
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 196.5
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 196.2
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 196.2
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 195.5
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 194.9
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 194.0
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 194.0
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 193.2
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 192.6
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 192.4
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 192.3
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 192.0
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 191.9
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 191.6
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 191.5
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 191.3
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 190.2
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 189.5
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 189.1
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 187.6
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 187.3
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 186.9
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 186.8
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 186.5
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 186.3
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 185.7
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 185.4
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 182.6
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 182.3
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 182.2
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 181.0
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 180.6
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 180.5
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 179.7
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 179.5
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 178.2
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 177.3
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 177.1
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 176.5
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 176.3
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 175.8
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 173.4
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 172.7
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 172.3
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 170.8
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 169.9
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 169.5
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 167.7
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 167.6
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 166.1
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 165.6
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 163.7
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 163.2
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 162.8
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 162.7
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 162.0
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 160.9
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 160.8
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 160.7
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 159.5
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 158.3
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 158.3
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 158.1
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 158.0
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 157.5
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 156.2
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 154.2
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 153.7
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 151.7
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 150.7
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 150.0
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 149.3
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 145.3
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 143.9
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 141.3
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 136.6
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 134.1
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 129.3
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 112.4
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 108.5
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 397.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 397.2
FF:10164-103B2 76 years, female 397.2

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 55.5
Pig sample Sample description nTPM
Caudate
nTPM: 55.5
Samples: 4

Max nTPM: 67.5
Min nTPM: 50.6
Sample A Female 50.6
Sample B Female 52.0
Sample C Male 67.5
Sample D Male 51.9

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