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RPS3A
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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM EPIDIDYMIS
ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA OVARY
PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE
SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glandular cells: Medium
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:1848.5 nTPM
HPA:1282.8 nTPM
GTEx:1848.5 nTPM
FANTOM5:64.7 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA047100
Glandular cells Medium



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Read more
Average nTPM 1282.8
overview
Male, age 65
Small intestine sample 232
nTPM: 1659
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 1268.9
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 1044.1
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 1159.1

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 1848.5
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 1848.5
Samples: 187

Max nTPM: 6010.0
Min nTPM: 842.5
Std nTPM: 679.5
Median nTPM: 1744.0
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 6010.0
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 4471.5
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 4154.0
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 3793.0
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 3521.5
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 3454.2
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 3359.0
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 3326.8
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 3319.0
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 3301.3
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 3287.5
GTEX-183FY-1626-SM-793D8 20-29 years, male 3015.6
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 2869.6
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 2861.1
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 2604.8
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 2595.6
GTEX-14PK6-1626-SM-6871I 70-79 years, female 2572.8
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 2556.9
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 2506.5
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 2504.1
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 2501.2
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 2489.4
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 2445.4
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 2436.1
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 2386.5
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 2325.4
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 2323.5
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 2312.7
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 2304.4
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 2299.1
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 2298.2
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 2297.2
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 2290.0
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 2286.5
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 2264.2
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 2247.5
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 2234.3
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 2198.2
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 2178.6
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 2162.3
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 2150.3
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 2132.0
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 2104.3
GTEX-14PKU-1626-SM-6871C 40-49 years, female 2100.3
GTEX-1C475-1426-SM-793CH 40-49 years, female 2099.8
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 2098.5
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 2093.0
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 2091.8
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 2085.5
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 2076.5
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 2069.9
GTEX-1192X-2526-SM-59868 50-59 years, male 2047.4
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 2040.6
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 2035.4
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 2007.3
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 1989.4
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 1982.2
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 1971.0
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 1970.8
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 1970.5
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 1969.2
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 1960.7
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 1960.3
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 1949.5
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 1941.1
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 1927.0
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 1926.4
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 1898.7
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 1886.3
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 1883.6
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 1881.3
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 1880.2
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 1877.3
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 1874.3
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 1866.6
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 1865.6
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 1864.2
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 1848.2
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 1846.7
GTEX-13O61-1326-SM-5KM31 60-69 years, male 1841.0
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 1839.0
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 1833.9
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 1833.7
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 1822.2
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 1821.4
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 1815.8
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 1810.1
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 1803.2
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 1799.9
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 1778.8
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 1767.1
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 1759.8
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 1749.1
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 1744.0
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 1737.9
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 1726.3
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 1712.3
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 1701.6
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 1700.3
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 1678.2
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 1677.3
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 1673.5
GTEX-117YX-0326-SM-5GICL 50-59 years, male 1668.4
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 1667.2
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 1665.8
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 1664.8
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 1649.7
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 1638.3
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 1618.4
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 1617.5
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 1614.3
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 1611.8
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 1595.6
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 1584.0
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 1583.1
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 1578.4
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 1574.9
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 1570.4
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 1570.1
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 1557.8
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 1557.4
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 1556.6
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 1551.0
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 1545.2
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 1542.9
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 1539.0
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 1538.4
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 1521.4
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 1513.5
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 1511.6
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 1501.7
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 1501.2
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 1493.3
GTEX-13113-1226-SM-5EGHT 60-69 years, female 1491.4
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 1474.9
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 1468.8
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 1460.8
GTEX-13111-1426-SM-5DUW3 50-59 years, male 1459.3
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 1452.2
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 1448.7
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 1431.9
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 1427.5
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 1425.2
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 1418.7
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 1418.4
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 1409.0
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 1400.6
GTEX-144GM-1026-SM-79OKU 20-29 years, male 1397.1
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 1395.4
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 1361.2
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 1346.9
GTEX-14PN3-2026-SM-68729 60-69 years, female 1337.3
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 1320.4
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 1317.9
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 1312.6
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 1294.2
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 1286.0
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 1282.4
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 1279.6
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 1273.3
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 1258.7
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 1258.3
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 1243.8
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 1228.0
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 1226.5
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 1211.9
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 1200.6
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 1198.3
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 1191.6
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 1191.4
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 1171.2
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 1141.9
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 1097.7
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 1091.7
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 1036.0
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 1027.3
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 1024.9
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 1001.4
GTEX-YFCO-1326-SM-664NV 40-49 years, male 993.8
GTEX-1122O-1326-SM-5H11F 60-69 years, female 989.8
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 988.0
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 958.5
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 942.9
GTEX-111YS-1426-SM-5GID8 60-69 years, male 894.6
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 875.5
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 874.8
GTEX-ZTSS-0926-SM-59865 40-49 years, male 842.5
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 64.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 64.7
FF:10024-101D6 15,40,85 years, mixed 64.7

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