MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:585.1 nTPM
HPA:585.1 nTPM
GTEx:305.4 nTPM
FANTOM5:76.9 Scaled Tags Per Million
Pig:264.2 nTPM
Mouse:224.5 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 585.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 574.5
2411 Female, age 72, unknown 582.3
1830 Male, age 51, unknown 581.4
1833 Male, age 53, unknown 580.7
1870 Female, age 42, unknown 578.6
2828 Female, age 72, unknown 574.3
2666 Male, age 74, left hemisphere 572.4
2219 Male, age 76, both hemispheres 572.1
1827 Male, age 72, unknown 570.2
2586 Male, age 75, left hemisphere 569.1
2019 Male, age 18, unknown 563.7
Dorsal raphe nucleus
nTPM: 573.6
2750 Male, age 76, both hemispheres 581.5
2016 Female, age 72, unknown 575.6
1828 Male, age 53, unknown 571.8
2298 Female, age 72, unknown 571.0
2047 Male, age 72, unknown 568.3
Inferior colliculus
nTPM: 577.3
2849 Male, age 72, unknown 586.3
1890 Male, age 53, unknown 582.8
1848 Female, age 42, unknown 573.9
2097 Female, age 72, unknown 566.2
Median raphe nucleus
nTPM: 577.5
2220 Male, age 76, midline 577.5
Pedunculopontine tegmental nucleus
nTPM: 580.9
2334 Male, age 80, both hemispheres 590.7
2338 Male, age 61, both hemispheres 582.2
1921 Female, age 85, both hemispheres 569.7
Periaquaductal grey, anterior
nTPM: 575.0
2502 Female, age 75, unknown 586.7
1947 Male, age 18, unknown 571.4
1795 Male, age 51, unknown 566.9
Periaquaductal grey, dorsal
nTPM: 572.7
2850 Male, age 76, both hemispheres 579.1
1831 Male, age 72, unknown 574.6
1840 Male, age 53, unknown 570.1
2464 Female, age 72, unknown 567.0
Periaquaductal grey, lateral
nTPM: 569.7
2140 Male, age 76, both hemispheres 571.5
2053 Male, age 18, unknown 568.9
2272 Male, age 74, both hemispheres 568.7
Pretectal area
nTPM: 566.4
2224 Female, age 72, unknown 575.6
2316 Male, age 76, right hemisphere 572.5
2825 Male, age 18, unknown 570.8
1817 Female, age 42, unknown 570.7
2007 Male, age 72, unknown 566.9
1944 Female, age 72, unknown 565.0
1815 Male, age 53, unknown 563.7
1816 Male, age 51, unknown 563.6
2273 Male, age 74, both hemispheres 561.6
2407 Male, age 75, both hemispheres 561.4
2667 Female, age 75, unknown 558.7
Red nucleus
nTPM: 580.5
2503 Female, age 72, unknown 600.4
2227 Male, age 72, unknown 585.9
1904 Male, age 53, unknown 585.5
2769 Male, age 72, unknown 584.5
1865 Male, age 51, unknown 584.2
2725 Female, age 75, unknown 583.7
2588 Male, age 74, left hemisphere 583.4
1821 Female, age 72, unknown 577.1
2584 Male, age 75, left hemisphere 573.3
2785 Male, age 18, unknown 573.3
1954 Female, age 42, unknown 567.9
2823 Male, age 76, right hemisphere 566.4
Substantia nigra
nTPM: 574.5
2699 Male, age 18, unknown 603.1
1851 Male, age 51, unknown 582.0
2665 Male, age 74, both hemispheres 579.4
1889 Female, age 72, unknown 578.9
1916 Female, age 42, unknown 574.4
2409 Female, age 72, unknown 573.3
2590 Female, age 75, unknown 573.1
1941 Male, age 53, unknown 563.1
2583 Male, age 75, right hemisphere 561.3
2241 Male, age 72, unknown 556.8
Superior colliculus
nTPM: 575.0
1913 Female, age 42, unknown 592.4
2587 Male, age 74, left hemisphere 589.4
1995 Male, age 72, unknown 583.2
1796 Male, age 53, unknown 578.0
1895 Male, age 76, right hemisphere 575.5
1839 Male, age 51, unknown 572.5
2668 Female, age 75, unknown 569.2
2261 Male, age 18, unknown 566.9
2087 Female, age 72, unknown 565.7
2664 Male, age 75, both hemispheres 556.7
Ventral tegmental area
nTPM: 585.1
2223 Female, age 72, unknown 597.2
2410 Female, age 72, unknown 589.1
1915 Female, age 42, unknown 585.2
2021 Male, age 53, unknown 582.5
2218 Male, age 76, both hemispheres 579.0
1942 Male, age 51, unknown 577.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 305.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 305.4
Samples: 139

Max nTPM: 947.7
Min nTPM: 65.9
Std nTPM: 136.2
Median nTPM: 275.5
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 947.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 860.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 721.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 667.9
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 578.7
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 552.7
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 527.8
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 526.4
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 509.9
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 499.8
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 495.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 76.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 76.9
FF:10158-103A5 76 years, female 76.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 264.2
Pig sample Sample description nTPM
Midbrain
nTPM: 257.7
Samples: 4

Max nTPM: 353.8
Min nTPM: 161.5
Sample A Female 353.8
Sample B Female 299.4
Sample C Male 216.0
Sample D Male 161.5
Periaqueductal gray
nTPM: 224.1
Samples: 3

Max nTPM: 245.9
Min nTPM: 190.8
Sample B Female 235.6
Sample C Male 245.9
Sample D Male 190.8
Substantia nigra
nTPM: 264.3
Samples: 4

Max nTPM: 356.1
Min nTPM: 189.7
Sample A Female 356.1
Sample B Female 286.7
Sample C Male 224.5
Sample D Male 189.7
Superior colliculi
nTPM: 251.3
Samples: 4

Max nTPM: 317.0
Min nTPM: 209.7
Sample A Female 317.0
Sample B Female 209.8
Sample C Male 268.6
Sample D Male 209.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 224.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 224.5
Samples: 4

Max nTPM: 269.7
Min nTPM: 185.3
Sample A Male 269.7
Sample B Male 217.4
Sample C Female 185.3
Sample D Female 225.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
71280850 Antisense, RP_050818_01_G02, Mouse strain C57BL/6J (56 days, male) 0.3
70918802 Antisense, RP_050712_04_E08, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.