MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:247.8 nTPM
HPA:247.8 nTPM
GTEx:334.3 nTPM
FANTOM5:352.1 Scaled Tags Per Million
Pig:159.9 nTPM
Mouse:332.5 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 247.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 233.6
1870 Female, age 42, unknown 247.4
1830 Male, age 51, unknown 240.3
2411 Female, age 72, unknown 238.5
1833 Male, age 53, unknown 237.7
2019 Male, age 18, unknown 235.7
2828 Female, age 72, unknown 232.7
1827 Male, age 72, unknown 230.9
2666 Male, age 74, left hemisphere 226.6
2219 Male, age 76, both hemispheres 224.8
2586 Male, age 75, left hemisphere 222.0
Dorsal raphe nucleus
nTPM: 237.1
2750 Male, age 76, both hemispheres 240.2
2298 Female, age 72, unknown 240.1
1828 Male, age 53, unknown 236.9
2016 Female, age 72, unknown 235.1
2047 Male, age 72, unknown 233.0
Inferior colliculus
nTPM: 234.7
1848 Female, age 42, unknown 236.4
2849 Male, age 72, unknown 236.2
2097 Female, age 72, unknown 233.3
1890 Male, age 53, unknown 233.1
Median raphe nucleus
nTPM: 239.5
2220 Male, age 76, midline 239.5
Pedunculopontine tegmental nucleus
nTPM: 247.8
2338 Male, age 61, both hemispheres 260.6
2334 Male, age 80, both hemispheres 249.4
1921 Female, age 85, both hemispheres 233.5
Periaquaductal grey, anterior
nTPM: 232.5
2502 Female, age 75, unknown 239.9
1947 Male, age 18, unknown 233.8
1795 Male, age 51, unknown 223.9
Periaquaductal grey, dorsal
nTPM: 232.3
2850 Male, age 76, both hemispheres 240.8
1840 Male, age 53, unknown 234.9
1831 Male, age 72, unknown 228.8
2464 Female, age 72, unknown 224.8
Periaquaductal grey, lateral
nTPM: 231.7
2272 Male, age 74, both hemispheres 234.1
2053 Male, age 18, unknown 231.5
2140 Male, age 76, both hemispheres 229.4
Pretectal area
nTPM: 234.8
1817 Female, age 42, unknown 240.7
1815 Male, age 53, unknown 238.1
2273 Male, age 74, both hemispheres 238.0
2224 Female, age 72, unknown 237.0
2407 Male, age 75, both hemispheres 235.0
1944 Female, age 72, unknown 234.9
2316 Male, age 76, right hemisphere 234.5
2667 Female, age 75, unknown 233.7
2007 Male, age 72, unknown 232.2
2825 Male, age 18, unknown 231.1
1816 Male, age 51, unknown 227.6
Red nucleus
nTPM: 239.9
1821 Female, age 72, unknown 250.8
1865 Male, age 51, unknown 249.3
1954 Female, age 42, unknown 245.1
2503 Female, age 72, unknown 243.4
1904 Male, age 53, unknown 241.6
2769 Male, age 72, unknown 238.7
2785 Male, age 18, unknown 238.3
2227 Male, age 72, unknown 238.0
2823 Male, age 76, right hemisphere 237.6
2725 Female, age 75, unknown 236.0
2584 Male, age 75, left hemisphere 233.3
2588 Male, age 74, left hemisphere 227.1
Substantia nigra
nTPM: 240.9
2241 Male, age 72, unknown 251.6
2699 Male, age 18, unknown 248.7
1851 Male, age 51, unknown 245.7
2665 Male, age 74, both hemispheres 245.3
1889 Female, age 72, unknown 243.1
1916 Female, age 42, unknown 239.8
2409 Female, age 72, unknown 239.1
2590 Female, age 75, unknown 237.8
1941 Male, age 53, unknown 236.2
2583 Male, age 75, right hemisphere 221.5
Superior colliculus
nTPM: 234.6
2587 Male, age 74, left hemisphere 250.3
1913 Female, age 42, unknown 240.2
1995 Male, age 72, unknown 238.1
1895 Male, age 76, right hemisphere 236.3
1839 Male, age 51, unknown 236.1
2668 Female, age 75, unknown 233.6
1796 Male, age 53, unknown 230.4
2261 Male, age 18, unknown 228.4
2087 Female, age 72, unknown 227.8
2664 Male, age 75, both hemispheres 224.9
Ventral tegmental area
nTPM: 239.7
1915 Female, age 42, unknown 242.7
2410 Female, age 72, unknown 242.6
2223 Female, age 72, unknown 241.9
2218 Male, age 76, both hemispheres 239.6
2021 Male, age 53, unknown 236.7
1942 Male, age 51, unknown 234.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 334.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 334.3
Samples: 139

Max nTPM: 597.7
Min nTPM: 214.5
Std nTPM: 76.7
Median nTPM: 310.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 597.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 562.1
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 555.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 554.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 539.0
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 499.2
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 498.3
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 478.2
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 470.4
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 459.4
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 457.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 352.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 352.1
FF:10158-103A5 76 years, female 352.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 159.9
Pig sample Sample description nTPM
Midbrain
nTPM: 152.9
Samples: 4

Max nTPM: 227.7
Min nTPM: 114.0
Sample A Female 227.7
Sample B Female 152.7
Sample C Male 114.0
Sample D Male 117.3
Periaqueductal gray
nTPM: 130.8
Samples: 3

Max nTPM: 134.1
Min nTPM: 125.4
Sample B Female 134.1
Sample C Male 132.9
Sample D Male 125.4
Substantia nigra
nTPM: 157.0
Samples: 4

Max nTPM: 204.6
Min nTPM: 130.1
Sample A Female 204.6
Sample B Female 153.5
Sample C Male 139.6
Sample D Male 130.1
Superior colliculi
nTPM: 159.9
Samples: 4

Max nTPM: 191.9
Min nTPM: 140.8
Sample A Female 191.9
Sample B Female 161.7
Sample C Male 145.2
Sample D Male 140.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 332.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 332.6
Samples: 4

Max nTPM: 349.9
Min nTPM: 321.2
Sample A Male 349.9
Sample B Male 331.1
Sample C Female 321.2
Sample D Female 328.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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