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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:256.5 nTPM
HPA:256.5 nTPM
GTEx:371.8 nTPM
FANTOM5:386.4 Scaled Tags Per Million
Pig:200.7 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 256.5
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 248.1
1981 Female, age 72, midline 267.4
2048 Male, age 55, midline 253.2
2816 Male, age 47, midline 243.1
2565 Male, age 75, midline 240.8
2194 Female, age 79, both hemispheres 235.9
Cervical spinal cord, dorsal horn
nTPM: 254.9
2173 Female, age 72, unknown 280.0
2296 Male, age 66, both hemispheres 267.2
2069 Male, age 47, both hemispheres 259.4
1877 Male, age 55, unknown 245.3
2721 Male, age 90, both hemispheres 242.9
2297 Male, age 75, both hemispheres 234.7
Cervical spinal cord, ventral horn
nTPM: 256.5
2098 Female, age 72, unknown 279.5
2480 Male, age 75, both hemispheres 264.2
2809 Male, age 90, both hemispheres 261.6
2295 Male, age 66, both hemispheres 252.4
2068 Male, age 55, unknown 249.4
2820 Female, age 79, both hemispheres 231.7

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 371.8
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 371.8
Samples: 159

Max nTPM: 593.8
Min nTPM: 203.1
Std nTPM: 66.1
Median nTPM: 370.9
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 593.8
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 547.5
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 539.8
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 512.7
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 504.4
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 496.2
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 494.0
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 492.5
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 492.0
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 485.7
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 484.0
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 483.9
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 477.3
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 475.5
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 472.5
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 467.1
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 464.1
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 459.0
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 456.3
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 454.6
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 454.0
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 450.1
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 449.7
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 443.6
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 441.3
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 437.4
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 432.7
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 428.9
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 424.0
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 421.7
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 414.2
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 413.9
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 412.6
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 412.6
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 412.4
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 412.2
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 411.6
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 411.5
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 407.5
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 406.5
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 404.8
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 404.0
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 402.0
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 399.7
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 393.0
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 392.6
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 392.5
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 391.9
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 391.8
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 390.5
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 389.7
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 389.6
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 388.8
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 388.5
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 388.4
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 387.3
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 387.1
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 385.8
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 385.7
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 384.4
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 383.7
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 383.3
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 382.7
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 382.6
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 381.6
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 381.2
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 380.6
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 380.3
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 379.5
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 379.3
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 378.2
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 378.2
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 376.6
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 376.6
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 375.2
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 373.8
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 373.7
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 372.8
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 371.0
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 370.9
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 370.6
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 369.8
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 369.5
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 369.1
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 368.2
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 364.5
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 362.5
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 362.4
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 362.3
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 362.2
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 362.1
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 359.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 359.2
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 356.6
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 355.2
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 354.4
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 352.7
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 352.0
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 351.7
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 350.0
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 349.9
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 347.6
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 347.3
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 346.7
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 344.1
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 343.3
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 341.8
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 340.7
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 340.3
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 336.5
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 335.6
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 334.9
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 334.3
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 333.3
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 331.7
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 331.4
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 331.1
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 330.9
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 329.8
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 329.3
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 328.8
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 328.6
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 326.1
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 324.3
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 323.6
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 323.4
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 321.7
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 319.8
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 316.2
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 315.3
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 314.8
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 313.1
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 312.1
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 309.3
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 306.1
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 306.0
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 305.3
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 301.4
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 298.5
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 298.2
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 295.4
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 293.1
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 289.7
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 286.4
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 284.1
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 283.0
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 281.6
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 281.3
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 280.5
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 279.1
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 277.6
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 271.4
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 268.6
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 265.2
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 262.2
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 252.2
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 239.6
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 203.1
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 203.1
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 386.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 386.4
FF:10181-103D1 60 years, female 390.5
FF:10159-103A6 76 years, female 382.3

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 200.7
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 194.2
Samples: 4

Max nTPM: 234.5
Min nTPM: 163.9
Sample A Female 163.9
Sample B Female 213.1
Sample C Male 234.5
Sample D Male 165.3
Ventral spinal cord
nTPM: 200.7
Samples: 4

Max nTPM: 218.3
Min nTPM: 176.1
Sample A Female 176.1
Sample B Female 218.3
Sample C Male 204.0
Sample D Male 204.3

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