MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:37.4 nTPM
HPA:37.4 nTPM
GTEx:32.1 nTPM
FANTOM5:31.1 Scaled Tags Per Million
Pig:18.5 nTPM
Mouse:16.1 nTPM
Allen mouse:5.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 37.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 34.3
2586 Male, age 75, left hemisphere 39.5
2666 Male, age 74, left hemisphere 37.6
2019 Male, age 18, unknown 36.4
2828 Female, age 72, unknown 33.9
1830 Male, age 51, unknown 33.4
1870 Female, age 42, unknown 33.0
2411 Female, age 72, unknown 33.0
1833 Male, age 53, unknown 32.8
2219 Male, age 76, both hemispheres 32.5
1827 Male, age 72, unknown 31.4
Dorsal raphe nucleus
nTPM: 34.5
1828 Male, age 53, unknown 38.2
2047 Male, age 72, unknown 37.6
2016 Female, age 72, unknown 32.9
2750 Male, age 76, both hemispheres 32.2
2298 Female, age 72, unknown 31.6
Inferior colliculus
nTPM: 32.0
1890 Male, age 53, unknown 33.3
1848 Female, age 42, unknown 32.1
2097 Female, age 72, unknown 31.3
2849 Male, age 72, unknown 31.3
Median raphe nucleus
nTPM: 35.4
2220 Male, age 76, midline 35.4
Pedunculopontine tegmental nucleus
nTPM: 32.5
2338 Male, age 61, both hemispheres 33.5
2334 Male, age 80, both hemispheres 32.8
1921 Female, age 85, both hemispheres 31.1
Periaquaductal grey, anterior
nTPM: 30.4
1795 Male, age 51, unknown 31.2
2502 Female, age 75, unknown 30.5
1947 Male, age 18, unknown 29.5
Periaquaductal grey, dorsal
nTPM: 29.7
2464 Female, age 72, unknown 30.7
1831 Male, age 72, unknown 30.4
1840 Male, age 53, unknown 29.1
2850 Male, age 76, both hemispheres 28.6
Periaquaductal grey, lateral
nTPM: 28.8
2272 Male, age 74, both hemispheres 29.0
2140 Male, age 76, both hemispheres 28.8
2053 Male, age 18, unknown 28.7
Pretectal area
nTPM: 30.7
2407 Male, age 75, both hemispheres 34.1
1817 Female, age 42, unknown 32.8
2007 Male, age 72, unknown 31.8
2667 Female, age 75, unknown 31.5
2825 Male, age 18, unknown 31.0
1816 Male, age 51, unknown 30.9
1944 Female, age 72, unknown 30.9
1815 Male, age 53, unknown 30.2
2224 Female, age 72, unknown 29.9
2316 Male, age 76, right hemisphere 27.9
2273 Male, age 74, both hemispheres 27.3
Red nucleus
nTPM: 35.0
2588 Male, age 74, left hemisphere 37.2
2584 Male, age 75, left hemisphere 37.0
2227 Male, age 72, unknown 36.5
1865 Male, age 51, unknown 35.7
2785 Male, age 18, unknown 35.5
2769 Male, age 72, unknown 35.4
1821 Female, age 72, unknown 34.6
1954 Female, age 42, unknown 34.2
2503 Female, age 72, unknown 34.2
2725 Female, age 75, unknown 33.8
1904 Male, age 53, unknown 33.7
2823 Male, age 76, right hemisphere 32.0
Substantia nigra
nTPM: 37.4
2665 Male, age 74, both hemispheres 41.9
1916 Female, age 42, unknown 41.8
2699 Male, age 18, unknown 41.1
1941 Male, age 53, unknown 39.6
2583 Male, age 75, right hemisphere 37.8
1851 Male, age 51, unknown 37.5
2409 Female, age 72, unknown 35.9
2590 Female, age 75, unknown 33.4
2241 Male, age 72, unknown 32.7
1889 Female, age 72, unknown 31.9
Superior colliculus
nTPM: 31.7
2668 Female, age 75, unknown 35.0
2664 Male, age 75, both hemispheres 33.8
1995 Male, age 72, unknown 32.4
1839 Male, age 51, unknown 31.8
2087 Female, age 72, unknown 31.8
2587 Male, age 74, left hemisphere 31.6
1913 Female, age 42, unknown 31.4
1796 Male, age 53, unknown 31.3
1895 Male, age 76, right hemisphere 30.0
2261 Male, age 18, unknown 27.8
Ventral tegmental area
nTPM: 34.5
1915 Female, age 42, unknown 37.4
2223 Female, age 72, unknown 35.5
2410 Female, age 72, unknown 34.9
2218 Male, age 76, both hemispheres 34.8
1942 Male, age 51, unknown 32.8
2021 Male, age 53, unknown 31.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 32.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 32.1
Samples: 139

Max nTPM: 52.7
Min nTPM: 20.6
Std nTPM: 5.4
Median nTPM: 31.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 52.7
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 50.7
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 46.9
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 45.8
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 44.8
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 42.8
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 42.6
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 41.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 40.1
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 40.1
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 39.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 31.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 31.1
FF:10158-103A5 76 years, female 31.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 18.5
Pig sample Sample description nTPM
Midbrain
nTPM: 17.6
Samples: 4

Max nTPM: 21.2
Min nTPM: 15.0
Sample A Female 21.2
Sample B Female 16.6
Sample C Male 17.5
Sample D Male 15.0
Periaqueductal gray
nTPM: 15.3
Samples: 3

Max nTPM: 17.7
Min nTPM: 13.0
Sample B Female 15.2
Sample C Male 17.7
Sample D Male 13.0
Substantia nigra
nTPM: 18.6
Samples: 4

Max nTPM: 20.8
Min nTPM: 15.3
Sample A Female 20.8
Sample B Female 17.8
Sample C Male 20.3
Sample D Male 15.3
Superior colliculi
nTPM: 17.4
Samples: 4

Max nTPM: 19.6
Min nTPM: 15.1
Sample A Female 17.5
Sample B Female 15.1
Sample C Male 19.6
Sample D Male 17.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 16.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 16.1
Samples: 4

Max nTPM: 17.0
Min nTPM: 15.4
Sample A Male 17.0
Sample B Male 15.9
Sample C Female 15.4
Sample D Female 16.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.8
68443063 Antisense, RP_050111_01_C09, Mouse strain C57BL/6J (56 days, male) 5.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.