MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:98.8 nTPM
HPA:98.8 nTPM
GTEx:199.3 nTPM
FANTOM5:8.9 Scaled Tags Per Million
Pig:202.4 nTPM
Mouse:171.1 nTPM
Allen mouse:22.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 98.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 23.7
2666 Male, age 74, left hemisphere 117.7
2219 Male, age 76, both hemispheres 102.4
1827 Male, age 72, unknown 14.2
1833 Male, age 53, unknown 3.5
1830 Male, age 51, unknown 0.0
1870 Female, age 42, unknown 0.0
2019 Male, age 18, unknown 0.0
2411 Female, age 72, unknown 0.0
2586 Male, age 75, left hemisphere 0.0
2828 Female, age 72, unknown 0.0
Dorsal raphe nucleus
nTPM: 21.1
2047 Male, age 72, unknown 49.9
2750 Male, age 76, both hemispheres 29.2
2298 Female, age 72, unknown 26.4
1828 Male, age 53, unknown 0.0
2016 Female, age 72, unknown 0.0
Inferior colliculus
nTPM: 5.8
1848 Female, age 42, unknown 21.9
2849 Male, age 72, unknown 1.4
1890 Male, age 53, unknown 0.0
2097 Female, age 72, unknown 0.0
Median raphe nucleus
nTPM: 95.7
2220 Male, age 76, midline 95.7
Pedunculopontine tegmental nucleus
nTPM: 0.7
1921 Female, age 85, both hemispheres 2.1
2334 Male, age 80, both hemispheres 0.0
2338 Male, age 61, both hemispheres 0.0
Periaquaductal grey, anterior
nTPM: 77.2
1947 Male, age 18, unknown 189.9
2502 Female, age 75, unknown 29.3
1795 Male, age 51, unknown 12.4
Periaquaductal grey, dorsal
nTPM: 3.4
1831 Male, age 72, unknown 13.8
1840 Male, age 53, unknown 0.0
2464 Female, age 72, unknown 0.0
2850 Male, age 76, both hemispheres 0.0
Periaquaductal grey, lateral
nTPM: 0.0
2053 Male, age 18, unknown 0.0
2140 Male, age 76, both hemispheres 0.0
2272 Male, age 74, both hemispheres 0.0
Pretectal area
nTPM: 0.6
2825 Male, age 18, unknown 6.6
1815 Male, age 53, unknown 0.0
1816 Male, age 51, unknown 0.0
1817 Female, age 42, unknown 0.0
1944 Female, age 72, unknown 0.0
2007 Male, age 72, unknown 0.0
2224 Female, age 72, unknown 0.0
2273 Male, age 74, both hemispheres 0.0
2316 Male, age 76, right hemisphere 0.0
2407 Male, age 75, both hemispheres 0.0
2667 Female, age 75, unknown 0.0
Red nucleus
nTPM: 0.2
2584 Male, age 75, left hemisphere 3.0
1821 Female, age 72, unknown 0.0
1865 Male, age 51, unknown 0.0
1904 Male, age 53, unknown 0.0
1954 Female, age 42, unknown 0.0
2227 Male, age 72, unknown 0.0
2503 Female, age 72, unknown 0.0
2588 Male, age 74, left hemisphere 0.0
2725 Female, age 75, unknown 0.0
2769 Male, age 72, unknown 0.0
2785 Male, age 18, unknown 0.0
2823 Male, age 76, right hemisphere 0.0
Substantia nigra
nTPM: 98.8
1916 Female, age 42, unknown 219.2
2665 Male, age 74, both hemispheres 190.0
1851 Male, age 51, unknown 144.8
2241 Male, age 72, unknown 121.9
1941 Male, age 53, unknown 115.1
2699 Male, age 18, unknown 100.0
2409 Female, age 72, unknown 78.1
2590 Female, age 75, unknown 13.2
2583 Male, age 75, right hemisphere 5.4
1889 Female, age 72, unknown 0.0
Superior colliculus
nTPM: 14.5
2668 Female, age 75, unknown 78.6
1796 Male, age 53, unknown 54.0
2261 Male, age 18, unknown 9.2
1895 Male, age 76, right hemisphere 3.9
1839 Male, age 51, unknown 0.0
1913 Female, age 42, unknown 0.0
1995 Male, age 72, unknown 0.0
2087 Female, age 72, unknown 0.0
2587 Male, age 74, left hemisphere 0.0
2664 Male, age 75, both hemispheres 0.0
Ventral tegmental area
nTPM: 72.3
2218 Male, age 76, both hemispheres 120.4
1915 Female, age 42, unknown 119.8
2410 Female, age 72, unknown 88.5
1942 Male, age 51, unknown 74.2
2223 Female, age 72, unknown 31.0
2021 Male, age 53, unknown 0.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 199.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 199.3
Samples: 139

Max nTPM: 948.9
Min nTPM: 3.4
Std nTPM: 195.9
Median nTPM: 119.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 948.9
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 717.4
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 681.3
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 660.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 659.3
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 637.8
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 627.5
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 604.1
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 588.0
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 578.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 558.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 8.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 8.9
FF:10158-103A5 76 years, female 8.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 202.4
Pig sample Sample description nTPM
Midbrain
nTPM: 91.7
Samples: 4

Max nTPM: 165.3
Min nTPM: 53.6
Sample A Female 54.8
Sample B Female 93.0
Sample C Male 53.6
Sample D Male 165.3
Periaqueductal gray
nTPM: 50.6
Samples: 3

Max nTPM: 63.4
Min nTPM: 35.6
Sample B Female 52.7
Sample C Male 63.4
Sample D Male 35.6
Substantia nigra
nTPM: 202.4
Samples: 4

Max nTPM: 364.2
Min nTPM: 36.2
Sample A Female 281.9
Sample B Female 127.3
Sample C Male 364.2
Sample D Male 36.2
Superior colliculi
nTPM: 84.4
Samples: 4

Max nTPM: 155.7
Min nTPM: 15.4
Sample A Female 155.7
Sample B Female 15.4
Sample C Male 28.5
Sample D Male 138.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 171.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 171.1
Samples: 4

Max nTPM: 174.7
Min nTPM: 166.4
Sample A Male 174.7
Sample B Male 169.2
Sample C Female 174.0
Sample D Female 166.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 22.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 22.6
308054482 Antisense, RP_110407_01_B06, Mouse strain C57BL/6J (56 days, male) 22.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.