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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:239.7 nTPM
HPA:239.7 nTPM
GTEx:455.7 nTPM
FANTOM5:490.6 Scaled Tags Per Million
Pig:248.2 nTPM
Mouse:528.2 nTPM
Allen mouse:31.8 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 239.7
Sample id Sample description nTPM
Amygdala
nTPM: 37.4
2517 Female, age 94, left hemisphere 116.9
1987 Female, age 91, left hemisphere 40.6
2514 Male, age 75, right hemisphere 29.4
2695 Female, age 67, right hemisphere 0.0
2814 Male, age 76, right hemisphere 0.0
Basal amygdala
nTPM: 213.0
2685 Female, age 94, left hemisphere 386.4
2827 Female, age 67, right hemisphere 258.7
2243 Female, age 91, right hemisphere 235.1
2110 Male, age 80, left hemisphere 187.8
2609 Male, age 75, right hemisphere 158.8
1955 Male, age 76, both hemispheres 50.9
Central amygdala
nTPM: 70.7
2826 Female, age 94, left hemisphere 238.2
2701 Female, age 91, right hemisphere 65.0
2239 Male, age 80, left hemisphere 44.4
2515 Male, age 75, right hemisphere 6.1
1905 Male, age 76, both hemispheres 0.0
Corticomedial amygdala
nTPM: 239.7
2242 Female, age 91, right hemisphere 375.5
2535 Female, age 67, right hemisphere 343.1
2829 Male, age 80, left hemisphere 335.3
2429 Female, age 94, left hemisphere 160.2
2428 Male, age 75, right hemisphere 159.9
2240 Male, age 76, both hemispheres 64.1
Lateral amygdala
nTPM: 85.1
2534 Female, age 94, left hemisphere 303.4
2256 Male, age 80, left hemisphere 165.8
2255 Female, age 91, right hemisphere 36.7
2830 Female, age 67, right hemisphere 4.8
1883 Male, age 76, both hemispheres 0.0
2516 Male, age 75, right hemisphere 0.0
Stria terminalis, bed nucleus
nTPM: 26.7
1974 Female, age 91, both hemispheres 42.3
2486 Female, age 94, both hemispheres 37.7
2201 Male, age 74, unknown 0.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 455.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 455.7
Samples: 152

Max nTPM: 1962.7
Min nTPM: 17.5
Std nTPM: 327.7
Median nTPM: 371.6
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1962.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 1371.4
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 1346.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 1301.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 1269.3
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 1189.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 1065.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 1051.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 1043.4
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 1039.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1024.7
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 990.6
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 970.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 939.2
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 924.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 920.6
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 907.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 883.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 838.5
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 829.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 816.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 813.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 802.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 801.6
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 782.3
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 753.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 743.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 737.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 735.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 728.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 723.4
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 717.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 698.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 673.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 655.9
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 652.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 638.0
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 636.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 609.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 585.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 585.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 584.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 575.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 572.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 565.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 559.6
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 554.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 551.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 543.2
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 540.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 540.6
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 538.8
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 534.6
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 523.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 496.3
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 495.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 492.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 485.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 479.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 471.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 452.0
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 447.9
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 446.6
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 438.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 435.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 429.4
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 425.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 420.6
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 418.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 417.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 400.1
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 399.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 395.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 390.6
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 376.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 373.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 369.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 343.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 331.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 330.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 319.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 318.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 308.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 308.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 307.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 302.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 301.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 300.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 292.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 291.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 288.3
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 279.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 275.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 274.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 273.6
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 272.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 271.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 270.8
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 261.1
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 259.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 257.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 256.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 255.3
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 250.0
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 249.7
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 245.1
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 240.8
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 239.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 237.9
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 227.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 225.4
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 224.2
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 223.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 223.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 222.6
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 221.9
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 215.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 214.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 214.3
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 207.0
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 206.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 188.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 184.7
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 183.2
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 179.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 178.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 173.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 168.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 166.6
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 161.2
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 160.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 156.0
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 155.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 155.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 150.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 135.5
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 131.9
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 114.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 110.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 106.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 104.3
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 103.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 99.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 95.8
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 75.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 73.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 68.3
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 47.2
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 37.5
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 25.5
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 17.6
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 17.5
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 490.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 490.6
FF:10151-102I7 76 years, female 490.6

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 248.2
Pig sample Sample description nTPM
Amygdala
nTPM: 248.2
Samples: 4

Max nTPM: 366.1
Min nTPM: 136.5
Sample A Female 366.1
Sample B Female 136.5
Sample C Male 188.1
Sample D Male 302.2

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 528.2
Mouse sample Sample description nTPM
Amygdala
nTPM: 528.2
Samples: 4

Max nTPM: 588.0
Min nTPM: 494.9
Sample A Male 494.9
Sample B Male 505.7
Sample C Female 588.0
Sample D Female 524.1

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 31.8
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 31.8
308054482 Antisense, RP_110407_01_B06, Mouse strain C57BL/6J (56 days, male) 31.8

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