MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:195.8 nTPM
HPA:195.8 nTPM
GTEx:140.5 nTPM
FANTOM5:329.0 Scaled Tags Per Million
Pig:143.8 nTPM
Mouse:9.7 nTPM
Allen mouse:6.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 195.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 181.8
2828 Female, age 72, unknown 229.1
2586 Male, age 75, left hemisphere 201.3
2666 Male, age 74, left hemisphere 191.4
1830 Male, age 51, unknown 184.5
1870 Female, age 42, unknown 181.4
1833 Male, age 53, unknown 178.4
2411 Female, age 72, unknown 177.3
1827 Male, age 72, unknown 163.6
2019 Male, age 18, unknown 157.9
2219 Male, age 76, both hemispheres 153.2
Dorsal raphe nucleus
nTPM: 157.4
2016 Female, age 72, unknown 191.0
2750 Male, age 76, both hemispheres 176.2
1828 Male, age 53, unknown 154.6
2047 Male, age 72, unknown 136.3
2298 Female, age 72, unknown 128.8
Inferior colliculus
nTPM: 137.7
2849 Male, age 72, unknown 153.2
1848 Female, age 42, unknown 148.1
1890 Male, age 53, unknown 134.3
2097 Female, age 72, unknown 115.3
Median raphe nucleus
nTPM: 116.8
2220 Male, age 76, midline 116.8
Pedunculopontine tegmental nucleus
nTPM: 142.8
2334 Male, age 80, both hemispheres 160.0
1921 Female, age 85, both hemispheres 149.7
2338 Male, age 61, both hemispheres 118.7
Periaquaductal grey, anterior
nTPM: 149.1
2502 Female, age 75, unknown 160.7
1795 Male, age 51, unknown 148.3
1947 Male, age 18, unknown 138.3
Periaquaductal grey, dorsal
nTPM: 149.7
1831 Male, age 72, unknown 170.9
2464 Female, age 72, unknown 158.5
2850 Male, age 76, both hemispheres 137.0
1840 Male, age 53, unknown 132.5
Periaquaductal grey, lateral
nTPM: 162.1
2053 Male, age 18, unknown 193.5
2272 Male, age 74, both hemispheres 148.3
2140 Male, age 76, both hemispheres 144.7
Pretectal area
nTPM: 149.7
2316 Male, age 76, right hemisphere 180.6
1815 Male, age 53, unknown 178.6
2825 Male, age 18, unknown 172.1
2407 Male, age 75, both hemispheres 162.9
2273 Male, age 74, both hemispheres 147.9
2667 Female, age 75, unknown 146.8
1817 Female, age 42, unknown 142.3
1944 Female, age 72, unknown 135.8
2224 Female, age 72, unknown 132.2
2007 Male, age 72, unknown 128.5
1816 Male, age 51, unknown 118.9
Red nucleus
nTPM: 195.8
2588 Male, age 74, left hemisphere 217.8
1865 Male, age 51, unknown 216.5
2503 Female, age 72, unknown 215.2
1904 Male, age 53, unknown 209.3
2823 Male, age 76, right hemisphere 205.8
2769 Male, age 72, unknown 202.7
2227 Male, age 72, unknown 196.4
1954 Female, age 42, unknown 181.5
2785 Male, age 18, unknown 179.7
1821 Female, age 72, unknown 178.4
2725 Female, age 75, unknown 174.4
2584 Male, age 75, left hemisphere 171.6
Substantia nigra
nTPM: 147.0
2699 Male, age 18, unknown 175.8
2583 Male, age 75, right hemisphere 169.5
2665 Male, age 74, both hemispheres 161.3
2409 Female, age 72, unknown 153.8
2590 Female, age 75, unknown 153.0
1851 Male, age 51, unknown 151.6
1889 Female, age 72, unknown 134.8
1941 Male, age 53, unknown 134.3
2241 Male, age 72, unknown 119.4
1916 Female, age 42, unknown 116.3
Superior colliculus
nTPM: 175.5
1995 Male, age 72, unknown 235.8
1913 Female, age 42, unknown 219.8
2587 Male, age 74, left hemisphere 179.0
1839 Male, age 51, unknown 173.2
2664 Male, age 75, both hemispheres 171.0
1895 Male, age 76, right hemisphere 168.3
2668 Female, age 75, unknown 168.2
1796 Male, age 53, unknown 160.4
2087 Female, age 72, unknown 144.4
2261 Male, age 18, unknown 135.4
Ventral tegmental area
nTPM: 155.1
2410 Female, age 72, unknown 167.2
1942 Male, age 51, unknown 166.4
2021 Male, age 53, unknown 162.1
2223 Female, age 72, unknown 151.9
1915 Female, age 42, unknown 143.3
2218 Male, age 76, both hemispheres 139.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 140.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 140.5
Samples: 139

Max nTPM: 398.3
Min nTPM: 44.2
Std nTPM: 62.2
Median nTPM: 130.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 398.3
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 315.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 302.7
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 288.9
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 288.5
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 281.3
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 263.0
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 253.4
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 245.9
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 240.4
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 235.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 329.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 329.0
FF:10158-103A5 76 years, female 329.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 143.8
Pig sample Sample description nTPM
Midbrain
nTPM: 132.7
Samples: 4

Max nTPM: 227.6
Min nTPM: 79.2
Sample A Female 227.6
Sample B Female 141.7
Sample C Male 79.2
Sample D Male 82.1
Periaqueductal gray
nTPM: 102.1
Samples: 3

Max nTPM: 118.1
Min nTPM: 83.0
Sample B Female 118.1
Sample C Male 83.0
Sample D Male 105.3
Substantia nigra
nTPM: 143.8
Samples: 4

Max nTPM: 230.7
Min nTPM: 98.5
Sample A Female 125.7
Sample B Female 98.5
Sample C Male 120.2
Sample D Male 230.7
Superior colliculi
nTPM: 99.7
Samples: 4

Max nTPM: 140.5
Min nTPM: 49.4
Sample A Female 102.9
Sample B Female 49.4
Sample C Male 105.9
Sample D Male 140.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 9.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 9.8
Samples: 4

Max nTPM: 12.6
Min nTPM: 7.6
Sample A Male 7.8
Sample B Male 7.6
Sample C Female 11.0
Sample D Female 12.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 6.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.6
74511880 Antisense, RP_051121_04_A01, Mouse strain C57BL/6J (56 days, male) 9.5
68667288 Antisense, RP_050201_02_A02, Mouse strain C57BL/6J (56 days, male) 3.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.