MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:828.4 nTPM
HPA:828.4 nTPM
GTEx:1127.9 nTPM
FANTOM5:4.0 Scaled Tags Per Million
Pig:210.1 nTPM
Mouse:596.8 nTPM
Allen mouse:16.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 828.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 812.9
2666 Male, age 74, left hemisphere 840.4
2411 Female, age 72, unknown 831.6
1870 Female, age 42, unknown 829.1
1827 Male, age 72, unknown 821.3
1833 Male, age 53, unknown 819.4
1830 Male, age 51, unknown 812.5
2828 Female, age 72, unknown 804.1
2219 Male, age 76, both hemispheres 796.3
2586 Male, age 75, left hemisphere 787.7
2019 Male, age 18, unknown 786.4
Dorsal raphe nucleus
nTPM: 808.4
2016 Female, age 72, unknown 827.6
2298 Female, age 72, unknown 816.5
2750 Male, age 76, both hemispheres 807.9
1828 Male, age 53, unknown 805.3
2047 Male, age 72, unknown 784.6
Inferior colliculus
nTPM: 817.9
2849 Male, age 72, unknown 823.3
2097 Female, age 72, unknown 820.4
1890 Male, age 53, unknown 814.2
1848 Female, age 42, unknown 813.5
Median raphe nucleus
nTPM: 796.1
2220 Male, age 76, midline 796.1
Pedunculopontine tegmental nucleus
nTPM: 824.3
2338 Male, age 61, both hemispheres 848.8
2334 Male, age 80, both hemispheres 834.2
1921 Female, age 85, both hemispheres 789.8
Periaquaductal grey, anterior
nTPM: 811.9
2502 Female, age 75, unknown 821.3
1947 Male, age 18, unknown 819.2
1795 Male, age 51, unknown 795.3
Periaquaductal grey, dorsal
nTPM: 811.4
1840 Male, age 53, unknown 837.4
1831 Male, age 72, unknown 814.4
2464 Female, age 72, unknown 806.3
2850 Male, age 76, both hemispheres 787.3
Periaquaductal grey, lateral
nTPM: 794.4
2053 Male, age 18, unknown 817.1
2140 Male, age 76, both hemispheres 783.8
2272 Male, age 74, both hemispheres 782.3
Pretectal area
nTPM: 799.2
2825 Male, age 18, unknown 827.8
1815 Male, age 53, unknown 811.2
2224 Female, age 72, unknown 803.8
1817 Female, age 42, unknown 803.6
2407 Male, age 75, both hemispheres 800.7
2316 Male, age 76, right hemisphere 799.0
2273 Male, age 74, both hemispheres 793.9
2007 Male, age 72, unknown 792.7
1816 Male, age 51, unknown 792.6
1944 Female, age 72, unknown 792.2
2667 Female, age 75, unknown 773.6
Red nucleus
nTPM: 824.1
2503 Female, age 72, unknown 869.3
1865 Male, age 51, unknown 846.1
1821 Female, age 72, unknown 842.8
2725 Female, age 75, unknown 827.4
2588 Male, age 74, left hemisphere 824.0
2227 Male, age 72, unknown 823.5
2584 Male, age 75, left hemisphere 820.7
1904 Male, age 53, unknown 820.4
2769 Male, age 72, unknown 820.1
1954 Female, age 42, unknown 808.7
2823 Male, age 76, right hemisphere 794.7
2785 Male, age 18, unknown 791.6
Substantia nigra
nTPM: 828.4
2409 Female, age 72, unknown 860.7
1851 Male, age 51, unknown 850.5
2699 Male, age 18, unknown 844.5
2665 Male, age 74, both hemispheres 844.0
2590 Female, age 75, unknown 835.4
2241 Male, age 72, unknown 833.5
1916 Female, age 42, unknown 808.1
1889 Female, age 72, unknown 804.1
1941 Male, age 53, unknown 802.6
2583 Male, age 75, right hemisphere 800.8
Superior colliculus
nTPM: 816.3
2587 Male, age 74, left hemisphere 850.2
1913 Female, age 42, unknown 834.4
1995 Male, age 72, unknown 826.5
2668 Female, age 75, unknown 824.2
1895 Male, age 76, right hemisphere 819.1
1839 Male, age 51, unknown 810.3
1796 Male, age 53, unknown 810.0
2261 Male, age 18, unknown 799.8
2664 Male, age 75, both hemispheres 798.4
2087 Female, age 72, unknown 790.5
Ventral tegmental area
nTPM: 816.0
1915 Female, age 42, unknown 841.2
2223 Female, age 72, unknown 835.1
2410 Female, age 72, unknown 816.1
2021 Male, age 53, unknown 808.2
1942 Male, age 51, unknown 803.1
2218 Male, age 76, both hemispheres 792.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 1127.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1127.9
Samples: 139

Max nTPM: 2675.2
Min nTPM: 552.5
Std nTPM: 363.9
Median nTPM: 1070.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 2675.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 2316.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 2315.2
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 2130.8
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 2074.6
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 1951.8
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 1880.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 1835.3
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 1734.1
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 1716.0
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 1691.8
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 4.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 4.0
FF:10158-103A5 76 years, female 4.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 210.1
Pig sample Sample description nTPM
Midbrain
nTPM: 201.8
Samples: 4

Max nTPM: 290.0
Min nTPM: 150.0
Sample A Female 290.0
Sample B Female 209.1
Sample C Male 157.9
Sample D Male 150.0
Periaqueductal gray
nTPM: 159.8
Samples: 3

Max nTPM: 165.5
Min nTPM: 150.4
Sample B Female 165.5
Sample C Male 163.4
Sample D Male 150.4
Substantia nigra
nTPM: 204.1
Samples: 4

Max nTPM: 260.1
Min nTPM: 164.9
Sample A Female 260.1
Sample B Female 218.8
Sample C Male 164.9
Sample D Male 172.6
Superior colliculi
nTPM: 210.1
Samples: 4

Max nTPM: 246.6
Min nTPM: 175.0
Sample A Female 237.9
Sample B Female 246.6
Sample C Male 180.9
Sample D Male 175.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 596.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 596.8
Samples: 4

Max nTPM: 629.8
Min nTPM: 559.9
Sample A Male 629.8
Sample B Male 606.6
Sample C Female 559.9
Sample D Female 591.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 16.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 16.7
68410596 Antisense, RP_041214_02_C02, Mouse strain C57BL/6J (56 days, male) 16.7

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.