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RPL7A
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BRAIN SUBSTANTIA NIGRA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
SUBSTANTIA NIGRA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
HPA:558.1 nTPM
GTEx:959.8 nTPM
FANTOM5:34.4 Scaled Tags Per Million
Pig:440.4 nTPM

SUBSTANTIA NIGRA - Annotated protein expression
Pending normal tissue analysis

SUBSTANTIA NIGRA - HPA Brain RNA-seq
Avg nTPM 558.1
Sample id Sample description nTPM
Substantia nigra
nTPM: 558.1
2665 Male, age 74, both hemispheres 579.1
1851 Male, age 51, unknown 568.2
2699 Male, age 18, unknown 564.0
2590 Female, age 75, unknown 561.1
2583 Male, age 75, right hemisphere 560.5
2241 Male, age 72, unknown 557.2
2409 Female, age 72, unknown 553.0
1916 Female, age 42, unknown 550.4
1941 Male, age 53, unknown 548.9
1889 Female, age 72, unknown 538.9

SUBSTANTIA NIGRA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 959.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 959.8
Samples: 139

Max nTPM: 2138.1
Min nTPM: 492.7
Std nTPM: 277.4
Median nTPM: 913.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 2138.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 1920.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 1901.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 1780.1
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 1673.8
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 1582.2
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 1538.3
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 1380.3
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 1363.0
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 1359.0
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 1354.1
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 1337.2
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 1317.3
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 1265.6
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 1259.6
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 1257.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 1248.5
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 1234.3
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 1232.4
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 1229.6
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 1206.5
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 1198.8
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 1157.3
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 1140.1
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 1134.4
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 1127.1
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 1122.7
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 1122.1
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 1114.8
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 1113.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 1113.4
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 1108.5
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 1103.1
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 1094.1
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 1086.1
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 1081.7
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 1070.0
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 1066.3
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 1065.0
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 1064.8
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 1040.5
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 1039.3
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 1038.9
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 1035.8
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 1032.0
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 1026.9
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 1026.1
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 1017.0
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 1015.6
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 1015.2
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 1012.1
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 1010.5
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 1001.6
GTEX-18464-0011-R2a-SM-731AL 50-59 years, male 998.1
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 990.5
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 983.6
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 982.0
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 981.6
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 980.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 976.3
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 969.6
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 960.6
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 945.6
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 944.2
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 942.9
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 931.1
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 925.4
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 915.9
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 915.3
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 913.1
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 912.2
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 906.2
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 905.6
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 902.3
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 900.0
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 896.2
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 881.9
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 879.8
GTEX-1F6IF-0011-R2b-SM-9QEHB 60-69 years, male 876.3
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 870.8
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 870.4
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 869.0
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 868.3
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 861.3
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 858.7
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 849.2
GTEX-11WQC-0011-R2a-SM-DO927 60-69 years, male 840.0
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 835.4
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 830.2
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 830.1
GTEX-XLM4-0011-R2B-SM-4AT5Z 60-69 years, male 822.1
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 821.2
GTEX-15DCD-0011-R2b-SM-6LPIE 70-79 years, female 816.2
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 815.3
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 806.3
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 801.7
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 798.7
GTEX-13FXS-0011-R2b-SM-5K7XX 50-59 years, male 796.7
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 791.9
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 784.7
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 769.3
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 762.9
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 762.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 756.8
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 756.8
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 753.9
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 749.1
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 748.0
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 740.5
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 733.9
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 724.6
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 720.3
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 713.9
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 713.2
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 713.1
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 709.7
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 705.3
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 703.3
GTEX-14ASI-0011-R2b-SM-5YY9H 60-69 years, male 701.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 686.8
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 684.6
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 683.3
GTEX-14JG1-0011-R2a-SM-5ZZVE 40-49 years, male 682.9
GTEX-11GSO-0011-R2a-SM-57WDF 60-69 years, male 682.0
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 681.8
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 667.5
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 664.3
GTEX-13RTJ-0011-R2a-SM-5PNW9 60-69 years, male 657.3
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 655.5
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 651.9
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 643.6
GTEX-1A3MX-0011-R2b-SM-7EWFL 60-69 years, male 639.1
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 625.1
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 620.6
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 595.9
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 588.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 582.8
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 559.2
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 492.7
Show allShow less

SUBSTANTIA NIGRA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 34.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 34.4
FF:10158-103A5 76 years, female 34.4

SUBSTANTIA NIGRA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 440.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 440.4
Samples: 4

Max nTPM: 718.0
Min nTPM: 335.9
Sample A Female 718.0
Sample B Female 335.9
Sample C Male 367.6
Sample D Male 339.9

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