BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:35.7 nTPM
HPA:35.7 nTPM
GTEx:28.3 nTPM
FANTOM5:118.9 Scaled Tags Per Million
Pig:43.9 nTPM
Mouse:95.4 nTPM
Allen mouse:9.9 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA036584
Glial cells Low
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 35.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 34.3
1854 Male, age 80, left hemisphere 35.5
2846 Female, age 79, unknown 35.0
1857 Female, age 85, left hemisphere 34.8
2288 Male, age 75, left hemisphere 34.7
2481 Female, age 94, left hemisphere 34.6
2290 Female, age 72, unknown 34.5
1781 Male, age 74, unknown 33.3
2289 Male, age 61, right hemisphere 32.2
Claustrum
nTPM: 32.1
1956 Male, age 74, unknown 33.6
2491 Male, age 75, both hemispheres 33.2
2196 Female, age 79, unknown 32.7
2198 Male, age 80, both hemispheres 32.6
2392 Female, age 94, both hemispheres 32.2
2292 Female, age 85, both hemispheres 31.9
2284 Female, age 91, both hemispheres 31.1
2568 Male, age 61, both hemispheres 31.1
2645 Female, age 72, unknown 30.2
Globus pallidus, externus
nTPM: 33.6
2772 Female, age 79, unknown 36.6
1996 Male, age 80, right hemisphere 35.2
2395 Male, age 75, both hemispheres 34.6
2646 Male, age 61, right hemisphere 31.1
2567 Female, age 72, unknown 30.7
Globus pallidus, internus
nTPM: 34.6
2778 Female, age 91, both hemispheres 36.3
2111 Female, age 85, right hemisphere 35.2
1818 Male, age 74, unknown 35.1
2287 Male, age 75, right hemisphere 34.9
2037 Male, age 80, right hemisphere 34.4
2483 Female, age 94, right hemisphere 34.2
2566 Female, age 72, unknown 32.2
Nucleus accumbens
nTPM: 35.7
1856 Female, age 91, right hemisphere 37.1
2824 Male, age 61, right hemisphere 36.9
1806 Female, age 85, left hemisphere 36.4
2286 Male, age 75, left hemisphere 36.3
2698 Female, age 72, unknown 35.9
2391 Female, age 94, left hemisphere 35.2
1783 Male, age 74, unknown 34.7
2732 Male, age 80, right hemisphere 33.4
Nucleus basalis of Meynert
nTPM: 33.4
2821 Male, age 75, both hemispheres 35.0
2393 Male, age 80, right hemisphere 34.7
2484 Female, age 94, left hemisphere 33.9
2569 Male, age 61, both hemispheres 30.1
Nucleus of the diagonal band
nTPM: 33.3
2775 Male, age 80, right hemisphere 34.7
1812 Female, age 91, both hemispheres 34.4
2195 Female, age 85, both hemispheres 33.1
1979 Male, age 74, unknown 32.8
2029 Male, age 61, right hemisphere 31.7
Olfactory tubercle
nTPM: 33.3
1846 Male, age 80, right hemisphere 34.2
2487 Female, age 94, left hemisphere 33.2
1998 Female, age 91, both hemispheres 33.0
2856 Male, age 75, right hemisphere 32.7
Putamen
nTPM: 33.8
2466 Female, age 79, unknown 35.6
1937 Female, age 91, right hemisphere 35.5
2482 Female, age 94, left hemisphere 35.3
1838 Male, age 80, right hemisphere 34.6
1829 Male, age 74, unknown 34.0
2489 Female, age 72, unknown 31.9
2647 Male, age 75, left hemisphere 30.1
Septal nuclei
nTPM: 33.3
2031 Female, age 72, unknown 35.1
2629 Female, age 94, right hemisphere 34.6
1960 Male, age 74, unknown 33.7
2009 Female, age 91, both hemispheres 33.4
2059 Female, age 85, both hemispheres 32.4
2394 Male, age 61, left hemisphere 32.1
2199 Male, age 80, right hemisphere 31.8

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 28.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 27.0
Samples: 246

Max nTPM: 65.9
Min nTPM: 10.2
Std nTPM: 8.7
Median nTPM: 25.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 65.9
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 59.2
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 57.3
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 53.4
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 52.6
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 52.3
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 51.8
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 48.8
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 47.9
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 47.4
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 46.9
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 28.3
Samples: 246

Max nTPM: 54.6
Min nTPM: 11.8
Std nTPM: 7.2
Median nTPM: 27.9
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 54.6
GTEX-11DZ1-0011-R6b-SM-DNZZG 50-59 years, male 51.0
GTEX-14E7W-0011-R6b-SM-5ZZV3 70-79 years, male 48.9
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 47.7
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 46.9
GTEX-1HR9M-0011-R6a-SM-ARU6Z 60-69 years, male 45.5
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 44.2
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 43.2
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 42.4
GTEX-12WSF-0011-R6b-SM-5HL8W 70-79 years, male 42.3
GTEX-X585-0011-R6A-SM-46MVJ 50-59 years, male 41.8
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Brain - Putamen (basal ganglia)
Average nTPM: 28.1
Samples: 205

Max nTPM: 70.0
Min nTPM: 11.3
Std nTPM: 8.4
Median nTPM: 26.8
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 70.0
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 57.2
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 52.2
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 51.2
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 46.8
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 45.5
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 44.3
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 43.5
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 43.4
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 43.0
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 42.9
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 118.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 61.0
FF:10164-103B2 76 years, female 61.0
Globus pallidus
Scaled Tags Per Million: 118.9
FF:10175-103C4 60 years, female 161.8
FF:10161-103A8 76 years, female 76.0
Nucleus accumbens
Scaled Tags Per Million: 52.5
FF:10037-101F1 23-56 years, mixed 52.5
Putamen
Scaled Tags Per Million: 81.4
FF:10176-103C5 60 years, female 81.4

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 43.9
Pig sample Sample description nTPM
Caudate
nTPM: 35.5
Samples: 4

Max nTPM: 39.8
Min nTPM: 31.9
Sample A Female 39.8
Sample B Female 31.9
Sample C Male 36.7
Sample D Male 33.6
Putamen
nTPM: 43.9
Samples: 4

Max nTPM: 49.3
Min nTPM: 36.5
Sample A Female 49.3
Sample B Female 36.5
Sample C Male 48.0
Sample D Male 41.9
Septum
nTPM: 43.4
Samples: 4

Max nTPM: 51.2
Min nTPM: 40.7
Sample A Female 51.2
Sample B Female 41.0
Sample C Male 40.7
Sample D Male 40.7
Ventral pallidum
nTPM: 38.1
Samples: 4

Max nTPM: 41.4
Min nTPM: 35.3
Sample A Female 37.7
Sample B Female 41.4
Sample C Male 35.3
Sample D Male 37.9

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 95.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 92.8
Samples: 4

Max nTPM: 98.6
Min nTPM: 88.6
Sample A Male 98.6
Sample B Male 94.4
Sample C Female 89.7
Sample D Female 88.6
Septum
nTPM: 92.8
Samples: 4

Max nTPM: 105.1
Min nTPM: 82.6
Sample A Male 82.6
Sample B Male 105.1
Sample C Female 96.8
Sample D Female 86.6
Ventral forebrain
nTPM: 95.4
Samples: 4

Max nTPM: 101.7
Min nTPM: 87.3
Sample A Male 98.2
Sample B Male 87.3
Sample C Female 101.7
Sample D Female 94.5

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 9.9
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 9.9
69262340 Antisense, RP_050303_02_B10, Mouse strain C57BL/6J (56 days, male) 9.9
Pallidum
Expression energy: 8.7
69262340 Antisense, RP_050303_02_B10, Mouse strain C57BL/6J (56 days, male) 8.7

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The Human Protein Atlas

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