MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:34.2 nTPM
HPA:34.2 nTPM
GTEx:26.3 nTPM
FANTOM5:80.4 Scaled Tags Per Million
Pig:49.0 nTPM
Mouse:85.0 nTPM
Allen mouse:7.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 34.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 32.6
2019 Male, age 18, unknown 34.7
1870 Female, age 42, unknown 34.6
2411 Female, age 72, unknown 34.6
1833 Male, age 53, unknown 33.5
1830 Male, age 51, unknown 33.0
1827 Male, age 72, unknown 32.0
2219 Male, age 76, both hemispheres 31.9
2828 Female, age 72, unknown 31.8
2666 Male, age 74, left hemisphere 30.5
2586 Male, age 75, left hemisphere 29.7
Dorsal raphe nucleus
nTPM: 33.8
2298 Female, age 72, unknown 34.8
2750 Male, age 76, both hemispheres 34.8
1828 Male, age 53, unknown 33.3
2047 Male, age 72, unknown 33.3
2016 Female, age 72, unknown 32.7
Inferior colliculus
nTPM: 33.5
2097 Female, age 72, unknown 34.2
1890 Male, age 53, unknown 33.8
1848 Female, age 42, unknown 33.6
2849 Male, age 72, unknown 32.3
Median raphe nucleus
nTPM: 32.8
2220 Male, age 76, midline 32.8
Pedunculopontine tegmental nucleus
nTPM: 33.7
2338 Male, age 61, both hemispheres 34.1
1921 Female, age 85, both hemispheres 33.6
2334 Male, age 80, both hemispheres 33.4
Periaquaductal grey, anterior
nTPM: 32.1
1947 Male, age 18, unknown 32.8
2502 Female, age 75, unknown 32.4
1795 Male, age 51, unknown 31.1
Periaquaductal grey, dorsal
nTPM: 32.0
2464 Female, age 72, unknown 33.3
1831 Male, age 72, unknown 32.1
1840 Male, age 53, unknown 31.5
2850 Male, age 76, both hemispheres 31.3
Periaquaductal grey, lateral
nTPM: 33.2
2272 Male, age 74, both hemispheres 35.1
2053 Male, age 18, unknown 33.0
2140 Male, age 76, both hemispheres 31.7
Pretectal area
nTPM: 33.1
2273 Male, age 74, both hemispheres 35.6
1817 Female, age 42, unknown 33.8
2224 Female, age 72, unknown 33.7
1944 Female, age 72, unknown 33.2
2667 Female, age 75, unknown 33.1
1816 Male, age 51, unknown 33.0
2007 Male, age 72, unknown 32.7
2316 Male, age 76, right hemisphere 32.5
1815 Male, age 53, unknown 32.3
2825 Male, age 18, unknown 31.9
2407 Male, age 75, both hemispheres 31.7
Red nucleus
nTPM: 34.2
1821 Female, age 72, unknown 36.2
1865 Male, age 51, unknown 36.2
1904 Male, age 53, unknown 36.0
2227 Male, age 72, unknown 34.7
2725 Female, age 75, unknown 34.6
1954 Female, age 42, unknown 34.5
2503 Female, age 72, unknown 34.4
2823 Male, age 76, right hemisphere 34.3
2769 Male, age 72, unknown 33.7
2785 Male, age 18, unknown 33.4
2588 Male, age 74, left hemisphere 31.9
2584 Male, age 75, left hemisphere 30.2
Substantia nigra
nTPM: 33.0
2409 Female, age 72, unknown 35.6
1889 Female, age 72, unknown 34.2
2241 Male, age 72, unknown 33.7
1851 Male, age 51, unknown 33.1
1916 Female, age 42, unknown 32.9
2590 Female, age 75, unknown 32.8
1941 Male, age 53, unknown 32.5
2699 Male, age 18, unknown 31.9
2583 Male, age 75, right hemisphere 31.8
2665 Male, age 74, both hemispheres 31.0
Superior colliculus
nTPM: 32.9
2587 Male, age 74, left hemisphere 35.5
1995 Male, age 72, unknown 34.0
1913 Female, age 42, unknown 33.6
1895 Male, age 76, right hemisphere 33.0
2261 Male, age 18, unknown 32.8
2087 Female, age 72, unknown 32.7
1796 Male, age 53, unknown 32.6
1839 Male, age 51, unknown 32.4
2668 Female, age 75, unknown 31.9
2664 Male, age 75, both hemispheres 30.5
Ventral tegmental area
nTPM: 33.3
2223 Female, age 72, unknown 33.9
2410 Female, age 72, unknown 33.8
1915 Female, age 42, unknown 33.7
2218 Male, age 76, both hemispheres 33.3
2021 Male, age 53, unknown 32.6
1942 Male, age 51, unknown 32.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 26.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 26.3
Samples: 139

Max nTPM: 60.5
Min nTPM: 12.7
Std nTPM: 7.1
Median nTPM: 25.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 60.5
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 50.4
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 46.7
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 42.5
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 41.9
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 41.3
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 41.0
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 39.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 38.4
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 36.5
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 35.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 80.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 80.4
FF:10158-103A5 76 years, female 80.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 49.0
Pig sample Sample description nTPM
Midbrain
nTPM: 46.9
Samples: 4

Max nTPM: 57.7
Min nTPM: 40.2
Sample A Female 57.7
Sample B Female 45.9
Sample C Male 40.2
Sample D Male 43.7
Periaqueductal gray
nTPM: 40.1
Samples: 3

Max nTPM: 42.7
Min nTPM: 38.8
Sample B Female 38.8
Sample C Male 42.7
Sample D Male 38.8
Substantia nigra
nTPM: 49.0
Samples: 4

Max nTPM: 57.0
Min nTPM: 45.1
Sample A Female 57.0
Sample B Female 46.4
Sample C Male 45.1
Sample D Male 47.3
Superior colliculi
nTPM: 47.1
Samples: 4

Max nTPM: 57.0
Min nTPM: 42.3
Sample A Female 57.0
Sample B Female 44.7
Sample C Male 42.3
Sample D Male 44.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 85.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 85.1
Samples: 4

Max nTPM: 88.5
Min nTPM: 82.2
Sample A Male 88.5
Sample B Male 86.2
Sample C Female 82.2
Sample D Female 83.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.7
69262340 Antisense, RP_050303_02_B10, Mouse strain C57BL/6J (56 days, male) 7.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.