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FAM171A1
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  • FAM171A1
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
GTEx:83.6 nTPM
FANTOM5:61.3 Scaled Tags Per Million
Pig:54.2 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA051345
Glial cells Low
Neuronal cells Medium


CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 83.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 83.6
Samples: 246

Max nTPM: 171.6
Min nTPM: 34.3
Std nTPM: 23.9
Median nTPM: 82.7
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 171.6
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 142.9
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 138.7
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 136.5
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 133.2
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 132.1
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 130.0
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 129.9
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 126.1
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 125.3
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 124.2
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 123.0
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 122.5
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 121.1
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 121.1
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 120.4
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 119.6
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 119.1
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 118.6
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 118.6
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 117.8
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 117.0
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 116.5
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 116.1
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 116.1
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 115.2
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 115.0
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 114.9
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 114.2
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 113.8
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 113.5
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 113.4
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 113.0
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 112.7
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 111.7
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 111.6
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 111.1
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 111.1
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 110.7
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 108.7
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 107.0
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 106.8
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 106.3
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 106.1
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 106.1
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 104.4
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 103.8
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 103.8
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 103.7
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 103.0
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 101.9
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 101.5
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 101.2
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 101.1
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 101.0
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 100.8
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 100.4
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 100.2
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 100.1
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 99.5
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 99.4
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 99.3
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 99.2
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 99.1
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 98.8
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 98.4
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 98.2
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 98.1
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 97.8
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 97.6
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 97.5
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 97.5
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 97.4
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 97.0
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 96.6
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 96.2
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 95.9
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 95.9
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 95.0
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 94.8
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 94.4
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 94.4
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 94.2
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 93.8
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 93.7
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 93.6
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 92.9
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 92.8
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 92.1
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 91.9
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 91.8
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 91.3
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 91.2
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 90.9
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 90.8
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 90.8
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 90.7
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 90.6
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 90.4
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 89.6
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 89.3
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 88.8
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 88.7
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 88.4
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 87.9
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 87.7
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 87.3
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 87.2
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 87.1
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 86.8
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 86.7
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 86.3
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 85.5
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 85.0
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 84.6
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 84.2
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 83.8
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 83.7
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 83.7
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 83.2
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 83.2
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 82.8
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 82.8
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 82.7
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 82.6
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 82.0
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 82.0
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 81.5
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 81.4
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 81.3
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 81.3
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 80.8
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 80.6
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 79.5
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 79.1
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 78.6
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 78.4
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 78.3
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 78.1
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 78.0
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 77.6
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 76.3
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 76.2
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 76.1
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 75.6
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 75.3
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 75.2
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 75.2
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 75.2
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 75.1
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 75.0
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 74.9
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 74.0
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 73.7
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 73.6
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 73.5
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 73.4
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 73.4
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 73.3
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 72.7
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 72.6
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 72.6
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 72.3
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 72.2
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 72.0
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 71.8
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 71.8
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 71.5
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 71.3
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 71.3
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 71.3
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 70.9
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 70.6
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 70.4
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 70.0
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 69.9
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 69.3
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 68.5
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 67.9
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 67.8
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 67.6
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 67.4
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 67.4
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 66.8
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 66.7
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 66.0
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 65.8
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 65.6
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 65.5
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 65.5
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 65.3
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 65.0
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 64.0
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 64.0
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 62.3
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 62.1
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 61.8
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 61.8
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 60.1
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 59.6
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 59.4
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 59.4
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 59.0
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 58.7
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 58.6
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 58.1
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 57.2
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 56.7
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 56.2
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 56.1
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 55.9
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 55.8
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 55.4
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 55.1
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 55.1
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 55.1
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 55.1
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 54.8
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 54.4
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 53.6
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 53.2
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 53.2
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 53.1
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 52.5
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 50.8
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 50.1
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 50.1
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 48.7
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 48.1
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 47.6
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 46.5
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 46.1
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 44.1
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 44.0
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 43.6
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 43.6
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 43.0
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 42.8
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 42.7
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 42.7
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 42.3
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 41.9
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 40.6
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 39.9
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 37.9
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 34.3
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 61.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 61.3
FF:10164-103B2 76 years, female 61.3

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 54.2
Pig sample Sample description nTPM
Caudate
nTPM: 54.2
Samples: 4

Max nTPM: 64.4
Min nTPM: 42.6
Sample A Female 42.6
Sample B Female 51.1
Sample C Male 64.4
Sample D Male 58.7

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