MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:222.9 nTPM
HPA:222.9 nTPM
GTEx:243.9 nTPM
FANTOM5:99.2 Scaled Tags Per Million
Mouse:242.0 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 222.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 195.6
2828 Female, age 72, unknown 236.8
1827 Male, age 72, unknown 214.0
2586 Male, age 75, left hemisphere 213.9
1870 Female, age 42, unknown 211.9
2411 Female, age 72, unknown 197.6
2666 Male, age 74, left hemisphere 185.1
1833 Male, age 53, unknown 182.7
2219 Male, age 76, both hemispheres 180.8
1830 Male, age 51, unknown 172.1
2019 Male, age 18, unknown 161.2
Dorsal raphe nucleus
nTPM: 222.9
2016 Female, age 72, unknown 236.9
2298 Female, age 72, unknown 231.1
2047 Male, age 72, unknown 229.3
1828 Male, age 53, unknown 220.5
2750 Male, age 76, both hemispheres 196.6
Inferior colliculus
nTPM: 219.1
2097 Female, age 72, unknown 232.9
1848 Female, age 42, unknown 224.9
2849 Male, age 72, unknown 212.4
1890 Male, age 53, unknown 206.0
Median raphe nucleus
nTPM: 183.1
2220 Male, age 76, midline 183.1
Pedunculopontine tegmental nucleus
nTPM: 183.4
1921 Female, age 85, both hemispheres 207.0
2334 Male, age 80, both hemispheres 189.5
2338 Male, age 61, both hemispheres 153.6
Periaquaductal grey, anterior
nTPM: 219.1
1795 Male, age 51, unknown 228.4
1947 Male, age 18, unknown 216.5
2502 Female, age 75, unknown 212.5
Periaquaductal grey, dorsal
nTPM: 216.7
1840 Male, age 53, unknown 256.3
2464 Female, age 72, unknown 223.1
2850 Male, age 76, both hemispheres 197.4
1831 Male, age 72, unknown 190.1
Periaquaductal grey, lateral
nTPM: 202.9
2053 Male, age 18, unknown 226.6
2140 Male, age 76, both hemispheres 205.5
2272 Male, age 74, both hemispheres 176.7
Pretectal area
nTPM: 208.9
2224 Female, age 72, unknown 233.5
2667 Female, age 75, unknown 233.2
1944 Female, age 72, unknown 231.1
1816 Male, age 51, unknown 220.2
2825 Male, age 18, unknown 220.0
1817 Female, age 42, unknown 212.1
2316 Male, age 76, right hemisphere 200.9
1815 Male, age 53, unknown 198.4
2273 Male, age 74, both hemispheres 193.3
2007 Male, age 72, unknown 178.8
2407 Male, age 75, both hemispheres 176.0
Red nucleus
nTPM: 178.5
2503 Female, age 72, unknown 199.6
2227 Male, age 72, unknown 191.5
2769 Male, age 72, unknown 190.2
1954 Female, age 42, unknown 188.5
1821 Female, age 72, unknown 187.2
2725 Female, age 75, unknown 184.6
1904 Male, age 53, unknown 175.9
2823 Male, age 76, right hemisphere 173.7
2588 Male, age 74, left hemisphere 170.3
1865 Male, age 51, unknown 166.8
2785 Male, age 18, unknown 159.8
2584 Male, age 75, left hemisphere 154.4
Substantia nigra
nTPM: 213.4
1916 Female, age 42, unknown 246.7
2699 Male, age 18, unknown 243.3
2241 Male, age 72, unknown 225.2
1851 Male, age 51, unknown 220.3
2665 Male, age 74, both hemispheres 214.6
1889 Female, age 72, unknown 206.4
1941 Male, age 53, unknown 201.0
2590 Female, age 75, unknown 198.7
2409 Female, age 72, unknown 198.5
2583 Male, age 75, right hemisphere 179.3
Superior colliculus
nTPM: 201.0
2087 Female, age 72, unknown 215.0
1796 Male, age 53, unknown 211.8
2664 Male, age 75, both hemispheres 208.7
2261 Male, age 18, unknown 208.4
1839 Male, age 51, unknown 204.4
1895 Male, age 76, right hemisphere 194.7
1913 Female, age 42, unknown 193.3
1995 Male, age 72, unknown 192.3
2587 Male, age 74, left hemisphere 192.3
2668 Female, age 75, unknown 188.7
Ventral tegmental area
nTPM: 205.3
1915 Female, age 42, unknown 224.0
1942 Male, age 51, unknown 214.0
2410 Female, age 72, unknown 211.7
2021 Male, age 53, unknown 207.0
2218 Male, age 76, both hemispheres 194.6
2223 Female, age 72, unknown 180.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 243.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 243.9
Samples: 139

Max nTPM: 651.9
Min nTPM: 70.8
Std nTPM: 111.4
Median nTPM: 219.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 651.9
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 633.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 609.3
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 569.3
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 555.6
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 549.6
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 463.9
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 437.0
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 433.2
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 425.0
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 420.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 99.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 99.2
FF:10158-103A5 76 years, female 99.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 242.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 242.0
Samples: 4

Max nTPM: 248.4
Min nTPM: 236.6
Sample A Male 248.4
Sample B Male 237.5
Sample C Female 236.6
Sample D Female 245.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
504 Antisense, RP_Baylor_102820, Mouse strain C57BL/6J (56 days, male) 0.1
503 Antisense, RP_Baylor_102820, Mouse strain C57BL/6J (56 days, male) 0.0
505 Sense, RPS_Baylor_36996, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.