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BRAIN PONS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Pons
PONS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
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Consensus:202.3 nTPM
HPA:202.3 nTPM
FANTOM5:106.3 Scaled Tags Per Million
Allen mouse:0.1 Expression energy

PONS - HPA Brain RNA-seq
Max nTPM 202.3
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 160.7
2301 Female, age 85, both hemispheres 166.6
1984 Male, age 76, both hemispheres 166.0
2090 Male, age 80, both hemispheres 156.2
2188 Female, age 91, both hemispheres 154.1
Dorsal cochlear nucleus
nTPM: 177.9
2058 Male, age 76, both hemispheres 187.2
2370 Male, age 61, both hemispheres 183.0
2802 Male, age 74, right hemisphere 182.8
2187 Female, age 91, both hemispheres 168.4
2378 Male, age 80, both hemispheres 168.3
Dorsal tegmental nucleus
nTPM: 178.2
1936 Male, age 76, left hemisphere 196.8
2083 Male, age 80, both hemispheres 188.4
2326 Male, age 74, both hemispheres 177.1
2358 Male, age 61, both hemispheres 150.6
Dorsolateral tegmental area
nTPM: 177.3
2751 Female, age 85, both hemispheres 191.3
2654 Male, age 80, both hemispheres 188.8
2141 Male, age 76, both hemispheres 184.9
2360 Male, age 74, both hemispheres 175.3
2337 Male, age 61, both hemispheres 146.1
Kolliker-Fuse nucleus
nTPM: 176.8
2315 Male, age 76, right hemisphere 197.7
2163 Male, age 80, both hemispheres 179.8
2793 Female, age 91, left hemisphere 152.9
Lateral lemniscal nuclei
nTPM: 171.5
2169 Male, age 76, both hemispheres 179.8
2036 Male, age 80, both hemispheres 177.3
2746 Female, age 85, left hemisphere 176.7
2453 Male, age 74, right hemisphere 166.7
2320 Female, age 91, left hemisphere 156.9
Lateral parabrachial nucleus
nTPM: 178.3
2139 Female, age 85, right hemisphere 201.7
2792 Male, age 76, both hemispheres 178.6
2013 Male, age 80, both hemispheres 177.3
2790 Male, age 61, both hemispheres 155.6
Lateral vestibular nucleus
nTPM: 172.7
2184 Male, age 76, both hemispheres 181.1
2311 Male, age 80, both hemispheres 164.2
Locus coeruleus
nTPM: 202.3
2317 Female, age 72, unknown 236.9
2014 Male, age 55, unknown 216.1
2788 Male, age 74, unknown 212.6
1980 Male, age 76, both hemispheres 200.2
2123 Female, age 91, both hemispheres 184.9
2720 Male, age 74, both hemispheres 183.0
2162 Male, age 80, both hemispheres 182.5
Medial olivary nucleus
nTPM: 189.0
2138 Female, age 91, both hemispheres 228.6
1943 Male, age 61, both hemispheres 180.1
1962 Male, age 76, both hemispheres 179.0
2851 Male, age 80, both hemispheres 168.3
Medial parabrachial nucleus
nTPM: 169.2
2786 Male, age 76, both hemispheres 184.8
2463 Female, age 85, right hemisphere 171.9
2170 Female, age 91, both hemispheres 169.2
2156 Male, age 61, both hemispheres 161.1
2854 Male, age 80, both hemispheres 158.8
Medial periolivary nuclei
nTPM: 170.3
2063 Male, age 76, both hemispheres 190.4
2791 Male, age 74, right hemisphere 181.8
2171 Female, age 85, both hemispheres 173.9
2458 Female, age 91, both hemispheres 153.5
2081 Male, age 80, both hemispheres 151.8
Motor facial nucleus
nTPM: 172.4
2795 Female, age 91, both hemispheres 205.0
2062 Male, age 76, both hemispheres 200.7
2365 Male, age 74, right hemisphere 169.5
2126 Male, age 61, both hemispheres 161.3
2327 Male, age 80, both hemispheres 152.0
2697 Female, age 85, both hemispheres 145.8
Motor trigeminal nucleus
nTPM: 163.9
2309 Male, age 76, both hemispheres 187.8
2079 Male, age 80, both hemispheres 162.4
2560 Male, age 74, both hemispheres 161.4
2335 Male, age 61, both hemispheres 157.3
2321 Female, age 91, both hemispheres 150.7
Nuclei of the trapezoid body
nTPM: 184.2
1983 Male, age 76, both hemispheres 204.7
2159 Male, age 61, both hemispheres 185.1
2368 Female, age 91, both hemispheres 184.4
2735 Female, age 85, both hemispheres 183.9
2166 Male, age 80, both hemispheres 162.8
Paramedian reticular nucleus
nTPM: 182.6
2313 Male, age 61, both hemispheres 191.0
2057 Male, age 80, both hemispheres 182.8
2052 Male, age 76, both hemispheres 178.9
2050 Female, age 85, both hemispheres 177.7
Pontine nuclei
nTPM: 169.1
1968 Male, age 76, left hemisphere 186.6
1863 Male, age 55, unknown 186.1
2727 Male, age 61, right hemisphere 178.0
2787 Female, age 85, both hemispheres 169.9
2109 Female, age 72, unknown 166.3
2115 Male, age 80, left hemisphere 157.5
2319 Female, age 91, both hemispheres 157.3
2454 Male, age 74, left hemisphere 150.9
Pontine raphe nucleus
nTPM: 188.0
2853 Male, age 76, midline 195.0
2122 Female, age 85, midline 181.0
Posteroventral cochlear nucleus
nTPM: 171.1
2371 Male, age 61, both hemispheres 185.8
2752 Female, age 85, both hemispheres 181.3
2070 Male, age 76, both hemispheres 180.9
2341 Male, age 80, both hemispheres 157.6
2135 Female, age 91, both hemispheres 150.1
Principal sensory trigeminal nucleus
nTPM: 171.3
2324 Male, age 76, both hemispheres 188.4
2008 Male, age 80, left hemisphere 174.3
2158 Male, age 61, both hemispheres 174.0
2367 Female, age 91, left hemisphere 148.4
Reticular pontine nucleus, caudal
nTPM: 165.9
2092 Male, age 76, both hemispheres 187.2
2332 Male, age 80, right hemisphere 160.6
2457 Female, age 91, both hemispheres 159.2
2559 Male, age 74, both hemispheres 156.8
Reticular pontine nucleus, oral
nTPM: 173.3
1939 Male, age 80, both hemispheres 192.8
2012 Female, age 85, both hemispheres 186.1
2167 Male, age 76, both hemispheres 184.6
2366 Female, age 91, both hemispheres 157.3
2361 Male, age 74, both hemispheres 146.0
Reticulotegmental nucleus
nTPM: 176.2
2325 Male, age 76, both hemispheres 192.4
2333 Male, age 80, both hemispheres 178.4
2322 Female, age 91, both hemispheres 168.3
2452 Male, age 74, both hemispheres 165.9
Spinal trigeminal nucleus, oral
nTPM: 175.9
1978 Male, age 76, both hemispheres 191.5
2737 Female, age 85, both hemispheres 178.1
2164 Male, age 80, both hemispheres 158.1
Subcoeruleus area
nTPM: 181.2
2451 Male, age 74, both hemispheres 192.9
2369 Female, age 85, left hemisphere 186.4
1958 Male, age 80, both hemispheres 186.0
2323 Female, age 91, left hemisphere 171.6
2089 Male, age 76, left hemisphere 169.3
Superior olive
nTPM: 170.5
2020 Male, age 76, both hemispheres 185.1
2364 Male, age 74, right hemisphere 174.4
1875 Female, age 85, both hemispheres 172.6
2329 Male, age 80, right hemisphere 162.7
2561 Female, age 91, both hemispheres 157.8
Superior vestibular nucleus
nTPM: 190.1
2061 Male, age 76, both hemispheres 196.3
2383 Male, age 74, both hemispheres 190.4
2015 Male, age 80, both hemispheres 183.6
Ventral periolivary nuclei
nTPM: 172.2
2023 Male, age 76, both hemispheres 187.7
2165 Male, age 80, both hemispheres 177.0
2130 Female, age 85, both hemispheres 174.7
2794 Female, age 91, left hemisphere 149.2
Ventrolateral tegmental area, A5 NE cell group
nTPM: 169.1
1959 Male, age 76, both hemispheres 179.1
2449 Male, age 74, both hemispheres 170.3
2456 Female, age 91, both hemispheres 168.0
2161 Male, age 80, both hemispheres 167.7
2840 Female, age 85, both hemispheres 167.1
2359 Male, age 61, both hemispheres 162.6

PONS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

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Max Scaled Tags Per Million 106.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 106.3
FF:10165-103B3 76 years, female 122.0
FF:10182-103D2 60 years, female 90.5
Pons
Scaled Tags Per Million: 72.2
FF:10033-101E6 18-54 years, mixed 72.2

PONS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

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Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Pons
Expression energy: 0.1
504 Antisense, RP_Baylor_102820, Mouse strain C57BL/6J (56 days, male) 0.3
503 Antisense, RP_Baylor_102820, Mouse strain C57BL/6J (56 days, male) 0.1
505 Sense, RPS_Baylor_36996, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.