MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:49.5 nTPM
HPA:49.5 nTPM
GTEx:51.2 nTPM
FANTOM5:77.0 Scaled Tags Per Million
Pig:31.9 nTPM
Mouse:135.0 nTPM
Allen mouse:0.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 49.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 46.1
1827 Male, age 72, unknown 48.9
1870 Female, age 42, unknown 48.1
2019 Male, age 18, unknown 47.3
2411 Female, age 72, unknown 47.3
1833 Male, age 53, unknown 46.6
1830 Male, age 51, unknown 46.2
2219 Male, age 76, both hemispheres 46.2
2828 Female, age 72, unknown 45.7
2586 Male, age 75, left hemisphere 44.1
2666 Male, age 74, left hemisphere 40.9
Dorsal raphe nucleus
nTPM: 48.3
2298 Female, age 72, unknown 50.1
2047 Male, age 72, unknown 48.7
2750 Male, age 76, both hemispheres 48.3
1828 Male, age 53, unknown 47.6
2016 Female, age 72, unknown 46.9
Inferior colliculus
nTPM: 47.1
2097 Female, age 72, unknown 49.5
1848 Female, age 42, unknown 47.6
1890 Male, age 53, unknown 46.0
2849 Male, age 72, unknown 45.3
Median raphe nucleus
nTPM: 49.5
2220 Male, age 76, midline 49.5
Pedunculopontine tegmental nucleus
nTPM: 49.2
1921 Female, age 85, both hemispheres 49.8
2338 Male, age 61, both hemispheres 49.3
2334 Male, age 80, both hemispheres 48.7
Periaquaductal grey, anterior
nTPM: 45.9
2502 Female, age 75, unknown 47.2
1947 Male, age 18, unknown 45.9
1795 Male, age 51, unknown 44.6
Periaquaductal grey, dorsal
nTPM: 47.3
1840 Male, age 53, unknown 48.6
2850 Male, age 76, both hemispheres 47.9
2464 Female, age 72, unknown 46.7
1831 Male, age 72, unknown 45.8
Periaquaductal grey, lateral
nTPM: 46.5
2053 Male, age 18, unknown 47.8
2272 Male, age 74, both hemispheres 46.0
2140 Male, age 76, both hemispheres 45.7
Pretectal area
nTPM: 47.8
2224 Female, age 72, unknown 49.8
2316 Male, age 76, right hemisphere 49.3
1817 Female, age 42, unknown 48.6
2007 Male, age 72, unknown 48.6
2667 Female, age 75, unknown 48.1
1944 Female, age 72, unknown 48.0
1815 Male, age 53, unknown 47.5
1816 Male, age 51, unknown 47.4
2273 Male, age 74, both hemispheres 47.4
2825 Male, age 18, unknown 45.5
2407 Male, age 75, both hemispheres 45.0
Red nucleus
nTPM: 46.5
1821 Female, age 72, unknown 49.7
1954 Female, age 42, unknown 49.0
2503 Female, age 72, unknown 47.3
1865 Male, age 51, unknown 47.0
1904 Male, age 53, unknown 46.8
2584 Male, age 75, left hemisphere 46.5
2823 Male, age 76, right hemisphere 46.5
2588 Male, age 74, left hemisphere 45.8
2725 Female, age 75, unknown 45.1
2769 Male, age 72, unknown 45.0
2785 Male, age 18, unknown 44.5
2227 Male, age 72, unknown 44.2
Substantia nigra
nTPM: 48.2
2241 Male, age 72, unknown 52.1
1916 Female, age 42, unknown 51.4
1851 Male, age 51, unknown 49.5
2699 Male, age 18, unknown 49.1
1941 Male, age 53, unknown 48.5
1889 Female, age 72, unknown 47.7
2590 Female, age 75, unknown 47.6
2665 Male, age 74, both hemispheres 47.1
2583 Male, age 75, right hemisphere 45.8
2409 Female, age 72, unknown 43.0
Superior colliculus
nTPM: 47.0
1895 Male, age 76, right hemisphere 50.3
2587 Male, age 74, left hemisphere 49.6
2261 Male, age 18, unknown 47.4
1796 Male, age 53, unknown 47.0
2087 Female, age 72, unknown 47.0
2668 Female, age 75, unknown 46.8
1995 Male, age 72, unknown 46.6
1839 Male, age 51, unknown 46.4
1913 Female, age 42, unknown 45.4
2664 Male, age 75, both hemispheres 43.4
Ventral tegmental area
nTPM: 47.2
1915 Female, age 42, unknown 49.0
2223 Female, age 72, unknown 47.6
1942 Male, age 51, unknown 47.2
2218 Male, age 76, both hemispheres 46.9
2410 Female, age 72, unknown 46.4
2021 Male, age 53, unknown 46.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 51.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 51.2
Samples: 139

Max nTPM: 94.5
Min nTPM: 28.6
Std nTPM: 10.9
Median nTPM: 49.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 94.5
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 87.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 78.9
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 77.8
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 75.8
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 74.6
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 74.3
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 72.4
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 69.8
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 69.7
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 69.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 77.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 77.0
FF:10158-103A5 76 years, female 77.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 31.9
Pig sample Sample description nTPM
Midbrain
nTPM: 31.7
Samples: 4

Max nTPM: 39.1
Min nTPM: 26.9
Sample A Female 39.1
Sample B Female 32.9
Sample C Male 27.7
Sample D Male 26.9
Periaqueductal gray
nTPM: 25.3
Samples: 3

Max nTPM: 25.9
Min nTPM: 24.2
Sample B Female 24.2
Sample C Male 25.9
Sample D Male 25.7
Substantia nigra
nTPM: 31.1
Samples: 4

Max nTPM: 40.3
Min nTPM: 25.9
Sample A Female 40.3
Sample B Female 29.3
Sample C Male 28.9
Sample D Male 25.9
Superior colliculi
nTPM: 31.9
Samples: 4

Max nTPM: 35.1
Min nTPM: 28.4
Sample A Female 35.1
Sample B Female 31.6
Sample C Male 32.6
Sample D Male 28.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 135.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 135.0
Samples: 4

Max nTPM: 137.5
Min nTPM: 132.2
Sample A Male 137.5
Sample B Male 136.7
Sample C Female 132.2
Sample D Female 133.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.6
68300974 Antisense, RP_041129_02_E07, Mouse strain C57BL/6J (56 days, male) 0.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.