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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:52.7 nTPM
HPA:52.7 nTPM
GTEx:55.6 nTPM
FANTOM5:97.7 Scaled Tags Per Million
Pig:35.7 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 52.7
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 50.1
1981 Female, age 72, midline 54.8
2048 Male, age 55, midline 52.8
2565 Male, age 75, midline 48.3
2816 Male, age 47, midline 47.7
2194 Female, age 79, both hemispheres 47.0
Cervical spinal cord, dorsal horn
nTPM: 52.7
2173 Female, age 72, unknown 56.9
2069 Male, age 47, both hemispheres 54.8
2296 Male, age 66, both hemispheres 54.4
1877 Male, age 55, unknown 51.1
2297 Male, age 75, both hemispheres 49.9
2721 Male, age 90, both hemispheres 49.2
Cervical spinal cord, ventral horn
nTPM: 50.6
2098 Female, age 72, unknown 55.9
2295 Male, age 66, both hemispheres 52.8
2809 Male, age 90, both hemispheres 51.3
2480 Male, age 75, both hemispheres 50.1
2068 Male, age 55, unknown 49.1
2820 Female, age 79, both hemispheres 44.5

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 55.6
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 55.6
Samples: 159

Max nTPM: 101.6
Min nTPM: 30.8
Std nTPM: 12.0
Median nTPM: 53.5
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 101.6
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 88.2
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 87.4
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 85.7
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 83.1
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 83.0
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 82.9
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 82.6
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 81.9
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 80.6
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 77.5
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 76.8
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 76.8
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 75.3
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 73.4
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 71.2
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 71.1
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 70.8
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 68.9
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 68.6
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 68.6
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 67.9
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 67.5
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 67.1
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 66.5
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 66.2
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 66.1
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 66.1
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 66.0
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 65.0
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 64.8
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 64.4
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 63.9
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 63.2
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 63.1
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 63.1
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 62.7
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 62.5
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 61.9
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 61.8
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 61.7
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 61.6
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 61.3
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 61.2
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 60.4
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 59.8
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 59.4
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 59.3
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 59.1
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 59.0
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 58.9
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 58.7
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 58.5
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 58.3
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 57.4
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 57.3
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 57.3
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 57.1
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 57.0
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 56.8
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 56.5
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 56.4
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 56.1
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 56.0
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 55.6
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 55.6
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 55.5
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 55.3
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 55.3
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 55.1
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 54.8
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 54.5
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 54.5
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 54.3
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 54.3
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 54.2
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 53.9
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 53.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 53.6
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 53.5
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 53.5
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 53.3
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 53.3
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 53.1
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 53.0
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 52.9
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 52.8
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 52.7
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 52.2
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 52.2
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 52.1
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 52.0
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 52.0
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 51.9
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 51.9
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 51.9
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 51.3
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 51.3
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 51.1
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 50.9
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 50.8
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 50.7
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 50.6
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 50.5
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 50.1
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 49.9
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 49.5
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 49.3
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 49.1
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 49.1
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 49.0
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 48.9
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 48.8
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 48.7
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 48.5
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 48.1
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 48.1
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 48.0
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 47.2
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 47.0
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 46.7
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 46.6
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 46.5
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 46.5
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 46.3
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 45.8
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 45.8
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 45.7
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 45.6
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 45.4
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 45.2
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 44.8
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 44.7
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 44.6
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 44.6
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 44.6
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 44.5
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 44.2
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 43.6
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 43.4
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 43.1
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 42.7
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 42.3
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 41.9
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 41.5
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 41.0
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 40.8
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 40.7
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 40.3
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 39.8
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 39.6
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 39.6
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 38.9
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 38.0
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 37.2
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 36.6
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 35.6
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 35.5
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 30.8
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 97.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 97.7
FF:10159-103A6 76 years, female 111.4
FF:10181-103D1 60 years, female 83.9

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 35.7
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 33.6
Samples: 4

Max nTPM: 38.2
Min nTPM: 29.6
Sample A Female 30.4
Sample B Female 36.3
Sample C Male 38.2
Sample D Male 29.6
Ventral spinal cord
nTPM: 35.7
Samples: 4

Max nTPM: 38.6
Min nTPM: 33.1
Sample A Female 33.1
Sample B Female 36.5
Sample C Male 34.5
Sample D Male 38.6

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