MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:61.0 nTPM
HPA:61.0 nTPM
GTEx:60.6 nTPM
FANTOM5:17.9 Scaled Tags Per Million
Pig:5.7 nTPM
Mouse:9.6 nTPM
Allen mouse:1.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 61.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 58.3
2666 Male, age 74, left hemisphere 63.8
2828 Female, age 72, unknown 63.2
2586 Male, age 75, left hemisphere 61.4
1870 Female, age 42, unknown 59.7
1830 Male, age 51, unknown 57.6
2411 Female, age 72, unknown 57.1
1833 Male, age 53, unknown 56.3
2019 Male, age 18, unknown 56.0
1827 Male, age 72, unknown 55.6
2219 Male, age 76, both hemispheres 52.3
Dorsal raphe nucleus
nTPM: 58.4
1828 Male, age 53, unknown 63.6
2047 Male, age 72, unknown 60.1
2016 Female, age 72, unknown 58.3
2750 Male, age 76, both hemispheres 56.7
2298 Female, age 72, unknown 53.4
Inferior colliculus
nTPM: 55.6
1848 Female, age 42, unknown 56.7
2849 Male, age 72, unknown 56.1
1890 Male, age 53, unknown 55.1
2097 Female, age 72, unknown 54.4
Median raphe nucleus
nTPM: 53.2
2220 Male, age 76, midline 53.2
Pedunculopontine tegmental nucleus
nTPM: 58.2
2338 Male, age 61, both hemispheres 66.8
2334 Male, age 80, both hemispheres 55.4
1921 Female, age 85, both hemispheres 52.3
Periaquaductal grey, anterior
nTPM: 54.9
1795 Male, age 51, unknown 56.3
2502 Female, age 75, unknown 54.8
1947 Male, age 18, unknown 53.5
Periaquaductal grey, dorsal
nTPM: 55.4
1831 Male, age 72, unknown 56.4
2464 Female, age 72, unknown 55.6
2850 Male, age 76, both hemispheres 55.2
1840 Male, age 53, unknown 54.6
Periaquaductal grey, lateral
nTPM: 55.7
2053 Male, age 18, unknown 59.6
2140 Male, age 76, both hemispheres 54.4
2272 Male, age 74, both hemispheres 53.2
Pretectal area
nTPM: 54.1
2825 Male, age 18, unknown 57.0
1817 Female, age 42, unknown 55.5
1815 Male, age 53, unknown 54.6
2316 Male, age 76, right hemisphere 54.4
2667 Female, age 75, unknown 54.4
2273 Male, age 74, both hemispheres 54.0
1944 Female, age 72, unknown 53.6
2407 Male, age 75, both hemispheres 53.3
2224 Female, age 72, unknown 53.2
2007 Male, age 72, unknown 52.8
1816 Male, age 51, unknown 52.4
Red nucleus
nTPM: 61.0
2823 Male, age 76, right hemisphere 65.3
2503 Female, age 72, unknown 63.5
1954 Female, age 42, unknown 62.7
2588 Male, age 74, left hemisphere 61.7
2769 Male, age 72, unknown 61.6
1865 Male, age 51, unknown 61.4
2227 Male, age 72, unknown 61.3
1821 Female, age 72, unknown 60.6
2725 Female, age 75, unknown 60.3
1904 Male, age 53, unknown 59.4
2584 Male, age 75, left hemisphere 57.2
2785 Male, age 18, unknown 56.9
Substantia nigra
nTPM: 56.5
2699 Male, age 18, unknown 59.5
1851 Male, age 51, unknown 58.2
2409 Female, age 72, unknown 58.2
1941 Male, age 53, unknown 56.4
2583 Male, age 75, right hemisphere 56.3
2590 Female, age 75, unknown 56.3
2665 Male, age 74, both hemispheres 55.9
1916 Female, age 42, unknown 55.4
1889 Female, age 72, unknown 54.8
2241 Male, age 72, unknown 53.5
Superior colliculus
nTPM: 56.6
1913 Female, age 42, unknown 59.9
1995 Male, age 72, unknown 59.6
2587 Male, age 74, left hemisphere 57.8
2664 Male, age 75, both hemispheres 57.5
2668 Female, age 75, unknown 56.5
1796 Male, age 53, unknown 56.1
1895 Male, age 76, right hemisphere 55.2
1839 Male, age 51, unknown 55.1
2087 Female, age 72, unknown 54.5
2261 Male, age 18, unknown 53.5
Ventral tegmental area
nTPM: 57.9
2223 Female, age 72, unknown 61.5
1915 Female, age 42, unknown 58.2
2410 Female, age 72, unknown 58.1
1942 Male, age 51, unknown 57.7
2021 Male, age 53, unknown 57.3
2218 Male, age 76, both hemispheres 54.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 60.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 60.6
Samples: 139

Max nTPM: 147.0
Min nTPM: 14.6
Std nTPM: 26.8
Median nTPM: 54.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 147.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 144.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 140.6
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 134.6
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 133.2
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 131.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 117.9
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 109.1
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 108.9
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 105.8
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 105.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 17.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 17.9
FF:10158-103A5 76 years, female 17.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 5.7
Pig sample Sample description nTPM
Midbrain
nTPM: 5.5
Samples: 4

Max nTPM: 12.1
Min nTPM: 2.8
Sample A Female 12.1
Sample B Female 3.7
Sample C Male 3.3
Sample D Male 2.8
Periaqueductal gray
nTPM: 2.9
Samples: 3

Max nTPM: 3.1
Min nTPM: 2.7
Sample B Female 3.1
Sample C Male 2.8
Sample D Male 2.7
Substantia nigra
nTPM: 4.7
Samples: 4

Max nTPM: 6.2
Min nTPM: 3.5
Sample A Female 5.1
Sample B Female 3.5
Sample C Male 3.9
Sample D Male 6.2
Superior colliculi
nTPM: 5.7
Samples: 4

Max nTPM: 9.4
Min nTPM: 4.1
Sample A Female 5.0
Sample B Female 9.4
Sample C Male 4.4
Sample D Male 4.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 9.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 9.7
Samples: 4

Max nTPM: 11.3
Min nTPM: 7.8
Sample A Male 11.3
Sample B Male 10.2
Sample C Female 7.8
Sample D Female 9.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.4
68443363 Antisense, RP_050111_01_H02, Mouse strain C57BL/6J (56 days, male) 1.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
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