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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Eye
Retina
RETINA - Expression summary
Protein expression
Retinai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Ganglion cells : Not detected
Inner nuclear layer: Not detected
Inner plexiform layer: Not detected
Limiting membrane: Not detected
Nerve fiber layer: Not detected
Outer plexiform layer: Not detected
Photoreceptor cells: High
Pigment epithelial cells: Not detected
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:1186.9 nTPM
GTEx:1186.9 nTPM
FANTOM5:188.7 Scaled Tags Per Million
Pig:154.5 nTPM
Mouse:3353.9 nTPM

RETINA - Extended tissue profilei

For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.

, antibody HPA028910
Pigment epithelial cells Not detected
Photoreceptor cells High
Limiting membrane Not detected
Outer plexiform layer Not detected
Inner nuclear layer Not detected
Inner plexiform layer Not detected
Ganglion cells Not detected
Nerve fiber layer Not detected

RETINA - Extended tissue profilei

For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.

, antibody HPA073279
Pigment epithelial cells Not detected
Photoreceptor cells High
Limiting membrane Not detected
Outer plexiform layer Medium
Inner nuclear layer Not detected
Inner plexiform layer Not detected
Ganglion cells Not detected
Nerve fiber layer Not detected

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 1186.9
GTEx sample id Sample description nTPM
Retina
Average nTPM: 1186.9
Samples: 105

Max nTPM: 2539.7
Min nTPM: 418.6
Std nTPM: 368.3
Median nTPM:
218_1 71 years, female 2539.7
354_1 81 years, female 1868.8
447_1 81 years, male 1853.7
352_1 62 years, male 1836.9
319_1 81 years, male 1819.8
237_1 82 years, male 1799.6
375_1 74 years, female 1779.2
6_1 73 years, female 1778.9
172_1 72 years, female 1759.4
321_1 62 years, female 1702.9
386_1 76 years, male 1675.6
379_1 60 years, male 1655.5
163_1 78 years, male 1640.2
384_1 83 years, male 1635.1
322_1 76 years, male 1634.6
355_1 70 years, female 1609.1
394_1 75 years, female 1597.8
243_1 75 years, male 1560.6
377_1 82 years, female 1548.3
389_1 86 years, female 1540.4
189_1 76 years, male 1494.8
350_1 84 years, female 1493.8
376_1 75 years, female 1479.7
347_1 72 years, male 1435.3
246_1 77 years, male 1427.4
425_1 59 years, female 1426.0
35_1 74 years, female 1422.8
349_1 83 years, male 1420.9
353_1 82 years, female 1390.6
286_1 68 years, female 1383.1
173_1 67 years, male 1380.0
320_1 89 years, female 1372.2
229_1 69 years, female 1364.4
293_1 68 years, female 1351.5
316_1 62 years, male 1347.2
503_1 68 years, male 1337.7
356_1 87 years, female 1335.3
317_1 60 years, male 1323.7
351_1 91 years, male 1297.4
307_1 66 years, female 1295.4
177_1 74 years, male 1273.2
251_1 78 years, male 1264.4
405_1 91 years, male 1263.6
318_1 68 years, male 1254.8
406_1 79 years, male 1241.6
396_1 62 years, male 1210.4
2_1 77 years, female 1202.6
266_1 85 years, male 1185.6
480_1 63 years, male 1180.0
526_1 61 years, male 1176.8
404_1 82 years, female 1158.6
335_1 73 years, female 1147.4
265_1 87 years, male 1131.7
99_1 64 years, male 1106.6
217_1 76 years, male 1100.4
4_1 88 years, female 1098.5
452_1 88 years, female 1094.9
468_1 89 years, male 1093.4
153_1 70 years, female 1093.0
311_1 78 years, male 1085.3
291_1 76 years, male 1078.5
292_1 71 years, male 1044.1
518_1 75 years, female 1036.8
348_1 84 years, male 1036.5
41_1 94 years, female 1036.4
137_1 83 years, male 1035.8
145_1 84 years, male 1034.0
517_1 88 years, male 1032.0
324_1 76 years, male 1030.7
495_1 57 years, female 1028.8
115_1 83 years, male 1021.7
264_1 73 years, female 1019.8
42_1 85 years, male 1011.8
17_1 71 years, male 997.4
295_1 61 years, female 992.7
254_1 77 years, female 975.3
126_1 63 years, male 957.8
415_1 77 years, female 957.0
308_1 70 years, female 946.4
313_1 79 years, female 944.0
9_1 66 years, female 934.0
315_1 62 years, female 894.4
142_1 61 years, female 891.1
506_1 65 years, male 890.2
499_1 55 years, female 889.6
117_1 61 years, male 873.3
414_1 84 years, female 868.5
120_1 70 years, female 855.9
288_1 66 years, female 820.5
139_1 64 years, female 813.2
162_1 79 years, female 804.6
18_1 88 years, male 773.4
314_1 67 years, male 746.2
43_1 64 years, female 724.9
109_1 81 years, female 717.6
466_1 57 years, female 716.8
32_1 67 years, male 707.8
81_1 67 years, male 706.2
490_1 67 years, female 691.1
119_1 70 years, female 626.5
89_1 63 years, male 613.9
413_1 59 years, female 547.5
149_1 88 years, male 454.3
501_1 88 years, male 454.0
491_1 89 years, female 418.6
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 188.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 188.7
FF:10030-101E3 24-65 years, mixed 188.7

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 154.5
Pig sample Sample description nTPM
Retina
nTPM: 154.5
Samples: 4

Max nTPM: 188.1
Min nTPM: 129.3
Sample A Female 153.8
Sample B Female 146.8
Sample C Male 188.1
Sample D Male 129.3

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 3353.9
Mouse sample Sample description nTPM
Retina
nTPM: 3354.0
Samples: 4

Max nTPM: 4282.7
Min nTPM: 2600.7
Sample A Male 3405.4
Sample B Male 3127.0
Sample C Female 4282.7
Sample D Female 2600.7

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The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.