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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.
, antibody HPA028910
Pigment epithelial cells
Not detected
Photoreceptor cells
High
Limiting membrane
Not detected
Outer plexiform layer
Not detected
Inner nuclear layer
Not detected
Inner plexiform layer
Not detected
Ganglion cells
Not detected
Nerve fiber layer
Not detected
RETINA - Extended tissue profilei
For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.
, antibody HPA073279
Pigment epithelial cells
Not detected
Photoreceptor cells
High
Limiting membrane
Not detected
Outer plexiform layer
Medium
Inner nuclear layer
Not detected
Inner plexiform layer
Not detected
Ganglion cells
Not detected
Nerve fiber layer
Not detected
RETINA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM: 2539.7
Min nTPM: 418.6
Std nTPM: 368.3
Median nTPM:
218_1
71 years, female
2539.7
354_1
81 years, female
1868.8
447_1
81 years, male
1853.7
352_1
62 years, male
1836.9
319_1
81 years, male
1819.8
237_1
82 years, male
1799.6
375_1
74 years, female
1779.2
6_1
73 years, female
1778.9
172_1
72 years, female
1759.4
321_1
62 years, female
1702.9
386_1
76 years, male
1675.6
379_1
60 years, male
1655.5
163_1
78 years, male
1640.2
384_1
83 years, male
1635.1
322_1
76 years, male
1634.6
355_1
70 years, female
1609.1
394_1
75 years, female
1597.8
243_1
75 years, male
1560.6
377_1
82 years, female
1548.3
389_1
86 years, female
1540.4
189_1
76 years, male
1494.8
350_1
84 years, female
1493.8
376_1
75 years, female
1479.7
347_1
72 years, male
1435.3
246_1
77 years, male
1427.4
425_1
59 years, female
1426.0
35_1
74 years, female
1422.8
349_1
83 years, male
1420.9
353_1
82 years, female
1390.6
286_1
68 years, female
1383.1
173_1
67 years, male
1380.0
320_1
89 years, female
1372.2
229_1
69 years, female
1364.4
293_1
68 years, female
1351.5
316_1
62 years, male
1347.2
503_1
68 years, male
1337.7
356_1
87 years, female
1335.3
317_1
60 years, male
1323.7
351_1
91 years, male
1297.4
307_1
66 years, female
1295.4
177_1
74 years, male
1273.2
251_1
78 years, male
1264.4
405_1
91 years, male
1263.6
318_1
68 years, male
1254.8
406_1
79 years, male
1241.6
396_1
62 years, male
1210.4
2_1
77 years, female
1202.6
266_1
85 years, male
1185.6
480_1
63 years, male
1180.0
526_1
61 years, male
1176.8
404_1
82 years, female
1158.6
335_1
73 years, female
1147.4
265_1
87 years, male
1131.7
99_1
64 years, male
1106.6
217_1
76 years, male
1100.4
4_1
88 years, female
1098.5
452_1
88 years, female
1094.9
468_1
89 years, male
1093.4
153_1
70 years, female
1093.0
311_1
78 years, male
1085.3
291_1
76 years, male
1078.5
292_1
71 years, male
1044.1
518_1
75 years, female
1036.8
348_1
84 years, male
1036.5
41_1
94 years, female
1036.4
137_1
83 years, male
1035.8
145_1
84 years, male
1034.0
517_1
88 years, male
1032.0
324_1
76 years, male
1030.7
495_1
57 years, female
1028.8
115_1
83 years, male
1021.7
264_1
73 years, female
1019.8
42_1
85 years, male
1011.8
17_1
71 years, male
997.4
295_1
61 years, female
992.7
254_1
77 years, female
975.3
126_1
63 years, male
957.8
415_1
77 years, female
957.0
308_1
70 years, female
946.4
313_1
79 years, female
944.0
9_1
66 years, female
934.0
315_1
62 years, female
894.4
142_1
61 years, female
891.1
506_1
65 years, male
890.2
499_1
55 years, female
889.6
117_1
61 years, male
873.3
414_1
84 years, female
868.5
120_1
70 years, female
855.9
288_1
66 years, female
820.5
139_1
64 years, female
813.2
162_1
79 years, female
804.6
18_1
88 years, male
773.4
314_1
67 years, male
746.2
43_1
64 years, female
724.9
109_1
81 years, female
717.6
466_1
57 years, female
716.8
32_1
67 years, male
707.8
81_1
67 years, male
706.2
490_1
67 years, female
691.1
119_1
70 years, female
626.5
89_1
63 years, male
613.9
413_1
59 years, female
547.5
149_1
88 years, male
454.3
501_1
88 years, male
454.0
491_1
89 years, female
418.6
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RETINA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.