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BRAIN PUTAMEN Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
PUTAMEN - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
HPA:36.1 nTPM
GTEx:30.1 nTPM
FANTOM5:14.9 Scaled Tags Per Million
Pig:11.4 nTPM

PUTAMEN - HPA Brain RNA-seq
Avg nTPM 36.1
Sample id Sample description nTPM
Putamen
nTPM: 36.1
2466 Female, age 79, unknown 39.6
2489 Female, age 72, unknown 39.3
2482 Female, age 94, left hemisphere 35.7
1937 Female, age 91, right hemisphere 35.1
1838 Male, age 80, right hemisphere 35.0
1829 Male, age 74, unknown 34.2
2647 Male, age 75, left hemisphere 33.6

PUTAMEN - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 30.1
GTEx sample id Sample description nTPM
Brain - Putamen (basal ganglia)
Average nTPM: 30.1
Samples: 205

Max nTPM: 146.0
Min nTPM: 7.0
Std nTPM: 18.3
Median nTPM: 25.6
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 146.0
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 145.4
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 89.8
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 74.3
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 67.8
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 65.5
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 64.6
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 64.2
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 63.8
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 63.7
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 63.1
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 62.5
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 61.8
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 61.6
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 61.1
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 55.5
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 54.7
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 54.4
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 53.3
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 52.2
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 51.1
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 49.2
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 49.0
GTEX-1EU9M-0011-R7b-SM-9OSVU 60-69 years, male 49.0
GTEX-1E1VI-0011-R7b-SM-9QEGR 50-59 years, male 48.2
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 47.5
GTEX-15DYW-0011-R7a-SM-7KULG 60-69 years, female 46.9
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 46.1
GTEX-183WM-0011-R7b-SM-731AX 70-79 years, female 44.1
GTEX-1GZ4I-0011-R7b-SM-ARU71 50-59 years, male 44.0
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 43.9
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 43.9
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 42.2
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 40.9
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 40.8
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 40.8
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 40.6
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 40.5
GTEX-14BMV-0011-R7b-SM-5YY9J 50-59 years, male 40.1
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 39.9
GTEX-15ER7-0011-R7a-SM-6M46N 20-29 years, female 39.7
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 39.6
GTEX-12ZZX-0011-R7b-SM-5DUVV 40-49 years, female 39.1
GTEX-13NYB-0011-R7a-SM-5MR5D 40-49 years, male 38.9
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 38.6
GTEX-1EX96-0011-R7a-SM-9OSVW 50-59 years, male 38.2
GTEX-Q2AG-0011-R7A-SM-2HMJP 40-49 years, female 38.0
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 38.0
GTEX-1H1DG-0011-R7b-SM-A96RR 70-79 years, male 37.4
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 37.3
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 36.6
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 36.5
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 36.5
GTEX-N7MT-0011-R7a-SM-2I3FZ 60-69 years, female 36.0
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 35.1
GTEX-18465-0011-R7b-SM-7LG6V 50-59 years, male 34.5
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 34.1
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 34.1
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 33.9
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 33.6
GTEX-1B8L1-0011-R7b-SM-9OSVK 60-69 years, male 33.3
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 33.1
GTEX-1CB4G-0011-R7b-SM-9QEGP 60-69 years, male 33.1
GTEX-1192X-0011-R7b-SM-DNZZC 50-59 years, male 32.6
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 32.4
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 32.2
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 32.1
GTEX-144GL-0011-R7b-SM-5P9HX 50-59 years, male 32.0
GTEX-15DCD-0011-R7b-SM-6LPID 70-79 years, female 32.0
GTEX-13OW8-0011-R7a-SM-5L3FP 60-69 years, male 31.9
GTEX-1445S-0011-R7b-SM-5PNUG 60-69 years, male 31.8
GTEX-N7MS-0011-R7a-SM-2HMKN 60-69 years, male 31.8
GTEX-14BIN-0011-R7b-SM-5S2RI 50-59 years, female 31.7
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 31.3
GTEX-13X6I-0011-R7b-SM-5PNWP 60-69 years, male 31.1
GTEX-1B8SF-0011-R7b-SM-9OSVM 60-69 years, male 30.5
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 30.0
GTEX-11DXW-0011-R7b-SM-DO119 40-49 years, male 29.7
GTEX-1IOXB-0011-R7b-SM-CE6SM 50-59 years, male 29.5
GTEX-WVLH-0011-R7A-SM-3MJFB 50-59 years, male 29.4
GTEX-1MJK2-0011-R7a-SM-EXUS4 50-59 years, male 29.2
GTEX-Y8DK-0011-R7A-SM-4SOJZ 60-69 years, male 28.9
GTEX-OHPN-0011-R7A-SM-2I5FI 60-69 years, female 28.8
GTEX-RU72-0011-R7A-SM-2TF5U 50-59 years, female 28.4
GTEX-13VXU-0011-R7b-SM-5SI72 50-59 years, male 28.3
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 28.3
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 28.3
GTEX-13X6K-0011-R7b-SM-5P9K7 60-69 years, female 27.7
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 27.7
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 27.5
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 27.4
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 27.3
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 27.1
GTEX-1J1OQ-0011-R7b-SM-ARU87 40-49 years, female 27.1
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 26.7
GTEX-14ASI-0011-R7b-SM-5YY9G 60-69 years, male 26.6
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 26.5
GTEX-13OW6-0011-R7b-SM-5L3H4 50-59 years, male 26.3
GTEX-145MG-0011-R7b-SM-5P9JY 50-59 years, male 26.2
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 26.0
GTEX-1I1GV-0011-R7a-SM-ARU6R 60-69 years, male 26.0
GTEX-1F75W-0011-R7a-SM-9QEI6 60-69 years, male 25.7
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 25.6
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 25.6
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 25.3
GTEX-P44G-0011-R7A-SM-2I3F9 30-39 years, male 25.2
GTEX-1JMQK-0011-R7b-SM-EXUTF 60-69 years, male 25.0
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 24.9
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 24.7
GTEX-WZTO-0011-R7B-SM-4E3IS 40-49 years, male 24.4
GTEX-147GR-0011-R7a-SM-5S2RP 60-69 years, male 24.3
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 24.1
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 23.8
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 23.5
GTEX-1GF9V-0011-R7a-SM-CJI2R 60-69 years, male 23.4
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 23.2
GTEX-145LS-0011-R7a-SM-5PNWM 60-69 years, female 22.9
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 22.9
GTEX-13FLV-0011-R7b-SM-5K7WW 50-59 years, male 22.5
GTEX-12ZZY-0011-R7a-SM-5EGLB 60-69 years, male 22.4
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 22.3
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 22.3
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 22.2
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 21.9
GTEX-11NUK-0011-R7a-SM-DO93P 50-59 years, male 21.9
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 21.8
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 21.7
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 21.5
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 21.4
GTEX-1OJC4-0011-R7a-SM-EYYX4 50-59 years, female 21.4
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 21.3
GTEX-11ONC-0011-R7b-SM-DO93J 60-69 years, male 21.3
GTEX-12ZZZ-0011-R7b-SM-5EGLE 60-69 years, male 21.2
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 21.1
GTEX-14JG1-0011-R7b-SM-5YYAV 40-49 years, male 21.1
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 20.9
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 20.8
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 20.7
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 20.7
GTEX-1A3MX-0011-R7a-SM-7DUEM 60-69 years, male 20.7
GTEX-YFC4-0011-R7b-SM-4V6E2 40-49 years, female 20.7
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 20.7
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 20.5
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 20.5
GTEX-14PJO-0011-R7a-SM-664NR 60-69 years, male 20.4
GTEX-1JJ6O-0011-R7b-SM-EXUTB 60-69 years, male 20.4
GTEX-1HGF4-0011-R7a-SM-A96S2 60-69 years, male 19.9
GTEX-13FXS-0011-R7a-SM-5L3FC 50-59 years, male 19.7
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 19.6
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 19.3
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 19.2
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 18.9
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 18.8
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 18.7
GTEX-TSE9-0011-R7A-SM-3DB7P 60-69 years, female 18.7
GTEX-11OF3-0011-R7a-SM-57WCG 60-69 years, male 18.6
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 18.6
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 18.3
GTEX-ZAB4-0011-R7a-SM-4SOKE 40-49 years, male 18.1
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 18.0
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 17.9
GTEX-13S7M-0011-R7a-SM-5O9DK 60-69 years, female 17.8
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 17.7
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 17.5
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 17.3
GTEX-13X6J-0011-R7b-SM-5PNUC 50-59 years, male 17.2
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 17.1
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 16.8
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 16.4
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 16.2
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 16.1
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 15.9
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 15.9
GTEX-11DXY-0011-R7a-SM-DO11L 60-69 years, male 15.9
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 15.9
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 15.6
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 15.6
GTEX-14ABY-0011-R7b-SM-5PNWS 50-59 years, male 15.4
GTEX-R55E-0011-R7A-SM-2TC5Z 20-29 years, male 15.3
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 15.3
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 14.9
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 14.5
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 14.5
GTEX-11TTK-0011-R7b-SM-DNZZZ 60-69 years, female 14.4
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 14.4
GTEX-13FLW-0011-R7b-SM-5L3EZ 50-59 years, male 14.2
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 13.9
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 13.8
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 13.7
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 13.6
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 13.5
GTEX-YJ89-0011-R7a-SM-4V6GO 60-69 years, male 13.4
GTEX-11GSP-0011-R7b-SM-57WC3 60-69 years, female 13.2
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 13.2
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 13.1
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 12.2
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 11.8
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 11.8
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 11.3
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 11.2
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 10.9
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 9.3
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 8.4
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 8.3
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 7.0
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PUTAMEN - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 14.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Putamen
Scaled Tags Per Million: 14.9
FF:10176-103C5 60 years, female 14.9

PUTAMEN - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 11.4
Pig sample Sample description nTPM
Putamen
nTPM: 11.4
Samples: 4

Max nTPM: 13.8
Min nTPM: 7.9
Sample A Female 10.5
Sample B Female 7.9
Sample C Male 13.5
Sample D Male 13.8

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